View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_1D_low_64 (Length: 204)

Name: NF9753_1D_low_64
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_1D_low_64
NF9753_1D_low_64
[»] chr4 (10 HSPs)
chr4 (1-68)||(29148077-29148144)
chr4 (148-196)||(29148011-29148059)
chr4 (8-62)||(50203109-50203163)
chr4 (23-62)||(7906079-7906118)
chr4 (23-62)||(22220442-22220481)
chr4 (23-74)||(37654433-37654483)
chr4 (16-62)||(19930749-19930795)
chr4 (16-62)||(52957866-52957912)
chr4 (18-63)||(11364260-11364305)
chr4 (1-62)||(41496240-41496301)
[»] chr8 (3 HSPs)
chr8 (23-74)||(37559612-37559662)
chr8 (23-62)||(15160525-15160564)
chr8 (16-62)||(4989513-4989559)
[»] chr3 (9 HSPs)
chr3 (2-62)||(42072020-42072080)
chr3 (8-62)||(36729870-36729925)
chr3 (23-62)||(42571605-42571644)
chr3 (23-62)||(48901755-48901794)
chr3 (23-62)||(48903321-48903360)
chr3 (23-62)||(50038247-50038286)
chr3 (16-62)||(36460841-36460887)
chr3 (16-62)||(41850425-41850471)
chr3 (17-62)||(45460698-45460743)
[»] scaffold0332 (1 HSPs)
scaffold0332 (23-62)||(3889-3928)
[»] scaffold0294 (1 HSPs)
scaffold0294 (23-74)||(3583-3633)
[»] chr7 (4 HSPs)
chr7 (23-62)||(25440907-25440946)
chr7 (8-62)||(19105063-19105117)
chr7 (17-62)||(27947572-27947617)
chr7 (18-62)||(6563486-6563530)
[»] chr5 (5 HSPs)
chr5 (23-62)||(3025010-3025049)
chr5 (23-62)||(7317063-7317102)
chr5 (23-62)||(10345011-10345050)
chr5 (16-62)||(21319382-21319428)
chr5 (23-72)||(32158586-32158634)
[»] chr2 (6 HSPs)
chr2 (23-74)||(14285962-14286012)
chr2 (23-62)||(22620413-22620452)
chr2 (23-62)||(43427366-43427405)
chr2 (16-62)||(13562029-13562075)
chr2 (23-61)||(17695904-17695942)
chr2 (1-62)||(8540073-8540134)
[»] chr1 (9 HSPs)
chr1 (23-62)||(12591159-12591198)
chr1 (23-62)||(25487123-25487162)
chr1 (23-62)||(26352158-26352197)
chr1 (23-62)||(27720993-27721032)
chr1 (23-62)||(34047312-34047351)
chr1 (23-74)||(44108623-44108673)
chr1 (23-62)||(50249345-50249384)
chr1 (8-62)||(18794604-18794658)
chr1 (8-62)||(49402933-49402987)
[»] scaffold0026 (1 HSPs)
scaffold0026 (2-62)||(4176-4236)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 29148144 - 29148077
Alignment:
Q  1 ttttaggagtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatttgtatt 68  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29148144 ttttaggagtaatatacataaaattaattggaggatccaagtgaaaagaaaaagttattatttgtatt 29148077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 29148059 - 29148011
Alignment:
Q  148 attatattaacctaagcaaatgtgaagaattgaacaaagaaattaacac 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29148059 attatattaacctaagcaaatgtgaagaattgaacaaagaaattaacac 29148011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 50203163 - 50203109
Alignment:
Q  8 agtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    ||||||||| |||| |||||||| ||||| ||| |||||||||||||||||||||    
T  50203163 agtaatgtatataatattaattgaagggtacaattgaaaagaaaaagttattatt 50203109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 7906079 - 7906118
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  7906079 attaattggagggtacaattgaaaagaaaaagttattatt 7906118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 22220442 - 22220481
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  22220442 attaattggagggtacaattgaaaagaaaaagttattatt 22220481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 37654483 - 37654433
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatttgtattggaaac 74  Q
    |||||||| ||||| ||| ||||||||||||||||||| |||||||||||||    
T  37654483 attaattgaagggtacaattgaaaagaaaaagttatta-ttgtattggaaac 37654433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 19930795 - 19930749
Alignment:
Q  16 acataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  19930795 acataatattaattgaagggtacaattgaaaagaaaaagttattatt 19930749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 52957866 - 52957912
Alignment:
Q  16 acataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  52957866 acataatattaattgaagggtacaattgaaaagaaaaagttattatt 52957912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 11364305 - 11364260
Alignment:
Q  18 ataaaattaattggagggtccaagtgaaaagaaaaagttattattt 63  Q
    |||| |||||||| ||||| ||| ||||||||||||||||||||||    
T  11364305 ataatattaattgaagggtacaattgaaaagaaaaagttattattt 11364260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41496301 - 41496240
Alignment:
Q  1 ttttaggagtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||| |||||| |||| |||| |||||||| || || ||| |||||||||||||||||||||    
T  41496301 ttttgggagtagtgtatataatattaattgaagagtacaattgaaaagaaaaagttattatt 41496240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 37559612 - 37559662
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatttgtattggaaac 74  Q
    |||||||||||||| ||| ||||||||||||||||||| |||||||||||||    
T  37559612 attaattggagggtacaattgaaaagaaaaagttatta-ttgtattggaaac 37559662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 15160525 - 15160564
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  15160525 attaattggagggtacaattgaaaagaaaaagttattatt 15160564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 4989559 - 4989513
Alignment:
Q  16 acataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  4989559 acataatattaattgaagggtacaattgaaaagaaaaagttattatt 4989513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 42072080 - 42072020
Alignment:
Q  2 tttaggagtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    ||||| ||||||||| |||| |||||||| ||||| ||  |||||||||||||||||||||    
T  42072080 tttagaagtaatgtatataatattaattgaagggtacagttgaaaagaaaaagttattatt 42072020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 36729870 - 36729925
Alignment:
Q  8 agtaatgta-cataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    ||||||||| ||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  36729870 agtaatgtaacataatattaattgaagggtacaattgaaaagaaaaagttattatt 36729925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 42571605 - 42571644
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  42571605 attaattggagggtacaattgaaaagaaaaagttattatt 42571644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 48901794 - 48901755
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  48901794 attaattggagggtacaattgaaaagaaaaagttattatt 48901755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 48903360 - 48903321
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  48903360 attaattggagggtacaattgaaaagaaaaagttattatt 48903321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 50038247 - 50038286
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  50038247 attaattggagggtacaattgaaaagaaaaagttattatt 50038286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 36460887 - 36460841
Alignment:
Q  16 acataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  36460887 acataatattaattgaagggtgcaattgaaaagaaaaagttattatt 36460841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 41850471 - 41850425
Alignment:
Q  16 acataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  41850471 acataatattaattgaagggtacaattgaaaagaaaaagttattatt 41850425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 45460743 - 45460698
Alignment:
Q  17 cataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    ||||| |||||||||||||| ||| |||||||||| ||||||||||    
T  45460743 cataatattaattggagggtacaattgaaaagaaagagttattatt 45460698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 3889 - 3928
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  3889 attaattggagggtacaattgaaaagaaaaagttattatt 3928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 3583 - 3633
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatttgtattggaaac 74  Q
    |||||||| ||||| ||| ||||||||||||||||||| |||||||||||||    
T  3583 attaattgaagggtacaattgaaaagaaaaagttatta-ttgtattggaaac 3633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 25440946 - 25440907
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  25440946 attaattggagggtacaattgaaaagaaaaagttattatt 25440907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 19105063 - 19105117
Alignment:
Q  8 agtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    ||||||||| |||  |||||||| ||||| ||| |||||||||||||||||||||    
T  19105063 agtaatgtatatagtattaattgaagggtacaattgaaaagaaaaagttattatt 19105117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 27947572 - 27947617
Alignment:
Q  17 cataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    ||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  27947572 cataatattaattgaagggtacaattgaaaagaaaaagttattatt 27947617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 6563486 - 6563530
Alignment:
Q  18 ataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||| |||||||| ||||| ||| |||||||||||||||||||||    
T  6563486 ataatattaattgaagggtacaattgaaaagaaaaagttattatt 6563530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 3025010 - 3025049
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  3025010 attaattggagggtacaattgaaaagaaaaagttattatt 3025049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 7317102 - 7317063
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  7317102 attaattggagggtacaattgaaaagaaaaagttattatt 7317063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 10345011 - 10345050
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  10345011 attaattggagggtacaattgaaaagaaaaagttattatt 10345050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 21319382 - 21319428
Alignment:
Q  16 acataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  21319382 acataatattaattgaagggtacaattgaaaagaaaaagttattatt 21319428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 32158634 - 32158586
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatttgtattggaa 72  Q
    |||||||||||||| ||| |||||| |||||||||||| |||||||||||    
T  32158634 attaattggagggtacaattgaaaaaaaaaagttatta-ttgtattggaa 32158586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 14286012 - 14285962
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatttgtattggaaac 74  Q
    |||||||||||||| ||| |||||| |||||||||||| |||||||||||||    
T  14286012 attaattggagggtacaattgaaaaaaaaaagttatta-ttgtattggaaac 14285962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 22620413 - 22620452
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  22620413 attaattggagggtacaattgaaaagaaaaagttattatt 22620452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 43427366 - 43427405
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  43427366 attaattggagggtacaattgaaaagaaaaagttattatt 43427405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 13562075 - 13562029
Alignment:
Q  16 acataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||| |||||||| ||||| ||| |||||||||||||||||||||    
T  13562075 acataacattaattgaagggtacaattgaaaagaaaaagttattatt 13562029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 17695904 - 17695942
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattat 61  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  17695904 attaattggagggtacaattgaaaagaaaaagttattat 17695942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8540134 - 8540073
Alignment:
Q  1 ttttaggagtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||| |||| |||| |||| |||||||| ||||| ||| | |||||||||||||||||||    
T  8540134 ttttagaagtagtgtaaataatattaattgaagggtacaattaaaaagaaaaagttattatt 8540073  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 12591159 - 12591198
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  12591159 attaattggagggtacaattgaaaagaaaaagttattatt 12591198  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 25487162 - 25487123
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  25487162 attaattggagggtacaattgaaaagaaaaagttattatt 25487123  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 26352158 - 26352197
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  26352158 attaattggagggtacaattgaaaagaaaaagttattatt 26352197  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 27721032 - 27720993
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  27721032 attaattggagggtacaattgaaaagaaaaagttattatt 27720993  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 34047312 - 34047351
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  34047312 attaattggagggtacaattgaaaagaaaaagttattatt 34047351  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 44108673 - 44108623
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatttgtattggaaac 74  Q
    |||||||| ||||| ||| ||||||||||||||||||| |||||||||||||    
T  44108673 attaattgaagggtacaattgaaaagaaaaagttatta-ttgtattggaaac 44108623  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 50249384 - 50249345
Alignment:
Q  23 attaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  50249384 attaattggagggtacaattgaaaagaaaaagttattatt 50249345  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 18794604 - 18794658
Alignment:
Q  8 agtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||| |||| |||| |||||||| ||||| ||| |||||||||||||||||||||    
T  18794604 agtagtgtatataatattaattgaagggtgcaactgaaaagaaaaagttattatt 18794658  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 49402933 - 49402987
Alignment:
Q  8 agtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    |||||||| || || ||||||||||| || ||| |||||||||||||||||||||    
T  49402933 agtaatgtgcaaaatattaattggagagtacaattgaaaagaaaaagttattatt 49402987  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 4236 - 4176
Alignment:
Q  2 tttaggagtaatgtacataaaattaattggagggtccaagtgaaaagaaaaagttattatt 62  Q
    ||||| |||| |||| |||| |||||||| ||||| ||| |||||||||||| ||||||||    
T  4236 tttagaagtagtgtatataatattaattgaagggtacaattgaaaagaaaaaattattatt 4176  T

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