View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_1D_low_7 (Length: 384)
Name: NF9753_1D_low_7
Description: NF9753_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_1D_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 45512442 - 45512072
Alignment:
| Q |
1 |
gaaagcttgtttggtgaatcatgtgcaatggatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagc |
100 |
Q |
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| T |
45512442 |
gaaagcttgtttggtgaatcatgtgcaatggatgctttgaaattgagaagggcttgcctctctttttcaatacaggggatgtttgaatttacacacaagc |
45512343 |
T |
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| Q |
101 |
atatttgtgcaatttcaatcaacaccaaaagtactacacatttgtaatatcttcccatgttttctatctctgtttctattgaaataattgaatgatggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512342 |
atatttgtgcaatttcaatcaacaccaaaagtactacacatttgtaatatcttcccatgttttctatctctgtttctattgaaataattgaatgatggtt |
45512243 |
T |
|
| Q |
201 |
ttcatttcactcacacaacttatataatacacccatcattttcacatgt---aagagctaaaataacttcctcgaagcaccaaacattcaaactataacc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45512242 |
ttcatttcactcacacaacttatataatacacccatcattttcacatgtaagaagagctaaaataacttcctcgaagcaccgaacattcaaactataacc |
45512143 |
T |
|
| Q |
298 |
aaatgtcaaggcaagttcttt-----gaaaaaataatctaatgtatttttaattatgcctttcgtttcact |
363 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45512142 |
aaatgtcaaggcaagttctttagaaaaaaaaaataatctaatgtatttttaattatgcctttcgtttcact |
45512072 |
T |
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