View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_2D_high_15 (Length: 311)
Name: NF9753_2D_high_15
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_high_15 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 38224393 - 38224098
Alignment:
| Q |
16 |
tgaacttaagatctcaaaacttgccttggagaaagaacagagaaaatttaaattttgtttactgaaatttttatgcagattcaaagctctttcaagatgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38224393 |
tgaacttaagatctcaaaacttgccttagagaaagaacaaagaaaatttaaattttgtttactgaaatttttatgcagattcaaagctctttcaagatgg |
38224294 |
T |
|
| Q |
116 |
atactcaaaggattgctggagtcaaatacgagtgcttgctttttggtatgatggataataatcttgcaagaatattggttaatgatgatgcatttcctct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38224293 |
atactcaaaggattgctggagtcaaatacgagtgcttgctttttggtatgatggataataatcttgcaagaatattggttaatgatgatgcatttcctct |
38224194 |
T |
|
| Q |
216 |
tcaaattttaatatagaaggaacttaaaagtaaatattgattatggttccacatgttggtagcagatatggatgacactctctacccattgagctt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38224193 |
tcaaattttaatatagaaggaacttaaaagtaaatattgattatggttccacatgttggtagcagatatggatgacactctctacccattgagctt |
38224098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University