View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_high_20 (Length: 255)

Name: NF9753_2D_high_20
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_high_20
NF9753_2D_high_20
[»] chr2 (7 HSPs)
chr2 (21-255)||(35128851-35129085)
chr2 (21-151)||(35132012-35132142)
chr2 (21-250)||(35097525-35097754)
chr2 (60-139)||(35654852-35654931)
chr2 (170-255)||(35654944-35655030)
chr2 (215-255)||(35132165-35132205)
chr2 (92-154)||(25682250-25682312)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 35129085 - 35128851
Alignment:
Q  21 aaccatctagattgcttgtctaatatatgtttccaaatagtagaacatcaaaattcagccactaaatctacaataaataaaattgtttgactaagatcta 120  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35129085 aaccatctagattgcttgtctaatatatattttcaaatagtagaacatcaaaattcagccactaaatctacaataaataaaattgtttgactaagatcta 35128986  T
Q  121 acggttaaaattttgaaatcacataatcatatttnnnnnnnnnntttaagatcttgcattgcgttctatatcaaaatcgtaccctcaatattattgcttc 220  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35128985 acggttaaaattttgaaatcacataatcatatttaaaaaacaaatttaagatcttgcattgcgttctatatcaaaatcgtaccctcaatattattgcttc 35128886  T
Q  221 tagaattccaattttttgtagaaatggattggagc 255  Q
    |||||||||||| ||||||||||||||||||||||    
T  35128885 tagaattccaatattttgtagaaatggattggagc 35128851  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 35132012 - 35132142
Alignment:
Q  21 aaccatctagattgcttgtctaatatatgtttccaaatagtagaacatcaaaattcagccactaaatctacaataaataaaattgtttgactaagatcta 120  Q
    ||||||||||||||||||  |||| ||| ||||||||  ||||||||||||||| |||||| || |||||||||||| |||||||||||| |||||||||    
T  35132012 aaccatctagattgcttgagtaatctatatttccaaagggtagaacatcaaaatccagccattagatctacaataaacaaaattgtttgattaagatcta 35132111  T
Q  121 acggttaaaattttgaaatcacataatcata 151  Q
    ||  |||||||||||||||||||||||||||    
T  35132112 acaattaaaattttgaaatcacataatcata 35132142  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 35097754 - 35097525
Alignment:
Q  21 aaccatctagattgcttgtctaatatatgtttccaaatagtagaacatcaaaattcagccactaaatctacaataaataaaattgtttgactaagatcta 120  Q
    ||||| |||||||||||| ||||| ||| ||| ||||   |||| ||||||||| || ||| || |||||||||||| |||| ||||||| |||||| ||    
T  35097754 aaccaactagattgcttgactaatctatattttcaaaggataga-catcaaaatccaaccattagatctacaataaacaaaactgtttgattaagattta 35097656  T
Q  121 acggttaaaattttgaaatcacataatcatatttnnnnnnnnnntttaagatcttgcattgcgttctat-atcaaaatcgtaccctcaatattattgctt 219  Q
    || |||| ||||||||||||||||||||||||||          |||||||||||| |||| ||||||| || || |||||||| ||| |||||||||||    
T  35097655 acagttataattttgaaatcacataatcatatttaaaaaacaaatttaagatcttgtattgtgttctataattaagatcgtaccatcagtattattgctt 35097556  T
Q  220 ctagaattccaattttttgtagaaatggatt 250  Q
    ||| |  |||||||||| | |||||||||||    
T  35097555 ctataggtccaatttttcggagaaatggatt 35097525  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 35654852 - 35654931
Alignment:
Q  60 gtagaacatcaaaattcagccactaaatctacaataaataaaattgtttgactaagatctaacggttaaaattttgaaat 139  Q
    ||||||||||||||| || ||| || |||||||||||| ||||| |||||| || |||||||| ||||||||||||||||    
T  35654852 gtagaacatcaaaatccaaccattagatctacaataaacaaaatcgtttgattatgatctaacagttaaaattttgaaat 35654931  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 35654944 - 35655030
Alignment:
Q  170 gatcttgcattgcgttctata-tcaaaatcgtaccctcaatattattgcttctagaattccaattttttgtagaaatggattggagc 255  Q
    ||||||||||||  ||||||| ||||||||||||  |||||||| |||||||| ||| | ||||||||   ||||||||||||||||    
T  35654944 gatcttgcattgtcttctataatcaaaatcgtacgatcaatattgttgcttctggaaattcaatttttcaaagaaatggattggagc 35655030  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 35132165 - 35132205
Alignment:
Q  215 tgcttctagaattccaattttttgtagaaatggattggagc 255  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  35132165 tgcttctagaagtccaattttttggagaaatggattggagc 35132205  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 25682250 - 25682312
Alignment:
Q  92 aataaataaaattgtttgactaagatctaacggttaaaattttgaaatcacataatcatattt 154  Q
    |||||| |||||||||||| ||||||| ||| ||||  |||||  ||||||||||||||||||    
T  25682250 aataaacaaaattgtttgattaagatcaaacagttaggattttagaatcacataatcatattt 25682312  T

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