View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_high_7 (Length: 507)
Name: NF9753_2D_high_7
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 31678619 - 31678247
Alignment:
| Q |
10 |
gatggacatcatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatct |
109 |
Q |
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| T |
31678619 |
gatggccataatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatct |
31678520 |
T |
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| Q |
110 |
gtagtagctcctattatatgaatcacattgaattatgatcattcatcaagaataaatagtgtcatagaagaaggnnnnnnnngagaggttttgagtaagt |
209 |
Q |
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| T |
31678519 |
gtagtagctcctataatatgaatcacattgaattatgatcattcatcaagaataaatagtgtcatagaagaaggaaaaaaaagagagattttgagtaagt |
31678420 |
T |
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| Q |
210 |
tattataagttgaaattgaagataaatacctgaggtattttgcattgattatcttcttttgtccatactttctccattcatagccatcttcaaacaaaat |
309 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
31678419 |
tattataagttgaaattgaatatatatacctgaggtattttgcattgattatcttcttttgtccatactttctccattcataaccatcttcaatcaaaat |
31678320 |
T |
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| Q |
310 |
tgagctatccttctcccaagtaagtgctttcgatcttatcaaagtgaaatagtctaccaataaatatcatatt |
382 |
Q |
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| T |
31678319 |
tgagctatccttctcccaagtaagtgcttttgatcttatcaaagtgaaatactctaccagtaaatatcatatt |
31678247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 31628772 - 31629147
Alignment:
| Q |
10 |
gatggacatcatatatggttctgtataatggagggtcctcttgaattctctgcacatgtttcatagcttcacattcttcatcacttttgtaactgcatct |
109 |
Q |
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| T |
31628772 |
gatggccataatatatggttctgtataatggagggtcctcttgaattctttgcacatgtttcatagctgcacattcttcatcacttttgtaactgcatct |
31628871 |
T |
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| Q |
110 |
gtagtagctcctattatatgaatcacat----tgaattatgatcattcatcaagaataaatagtgtcatagaagaaggnnnnnnnn---gagaggttttg |
202 |
Q |
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| T |
31628872 |
gtagtagctcctataatatgaatcatatatattgaattatgattattcattaagaattaatagtgtcatagaagaagaagaaaaagagagcgagattttg |
31628971 |
T |
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| Q |
203 |
agtaagttattataagttgaaattgaagataaatacctgaggtattttgcattgattatcttcttttgtccatactttctccattcatagccatcttcaa |
302 |
Q |
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| T |
31628972 |
agtaagttattataagttgaaattgaagata----cctgaggtattttgcattgattatcttcttttgtccatactttctccattcatagccatcttcaa |
31629067 |
T |
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| Q |
303 |
acaaaattgagctatccttctcccaagtaagtgctttcgatcttatcaaagtgaaatagtctaccaataaatatcatatt |
382 |
Q |
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| T |
31629068 |
acaaaattgagctatccttctcccaagtaagtgcttttgatcttatcaaagagaaatagtcttccaataaatatcatatt |
31629147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 375 - 482
Target Start/End: Original strand, 29464471 - 29464578
Alignment:
| Q |
375 |
atcatattagcatcatcattaatcacaagataaaaaaggagtaacaaagtttaatcaataatacaattatccatatgcaatttgctagttgatacataac |
474 |
Q |
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| T |
29464471 |
atcatattagcatcatcattaatcacaagataaaaaaggagtaacaaagtttaatcaataatacaattatccatatgcaatttgctagttgatacataac |
29464570 |
T |
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| Q |
475 |
ttttcagg |
482 |
Q |
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|||||||| |
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| T |
29464571 |
ttttcagg |
29464578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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