View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_2D_low_12 (Length: 537)
Name: NF9753_2D_low_12
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 33 - 530
Target Start/End: Complemental strand, 8340377 - 8339875
Alignment:
| Q |
33 |
cttccaataattaaattacttttttagccaaaacctaaaagctaaagtcaatttcaattttaatatagtaaccaaaattgatagtttatacaaaaagagg |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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|
| T |
8340377 |
cttcaaataattaaattacttttttagccaaaacctaaaagctaaagtcaatttcaattttaatatagtaaccaaaattgagagtttatacaaaaagaag |
8340278 |
T |
|
| Q |
133 |
---gaaaaagagagatgacctaaaacaaattgtctgtacattagcaaaataaaataaaattgggagtttaaagaataagaaaagattgcctgcacattac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8340277 |
aaggaaaaagagagatgacctaaaacaaattgtctg---attagcaaaataaaataaaattgggagtttaaagaataagaaaagattgcctgcacattac |
8340181 |
T |
|
| Q |
230 |
ttaaaaacaaagactctacaataaggtttaaagcaagaacaaatttagtcctacatc--agccactcttaagacattgagagatgagcaaggttataaat |
327 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
8340180 |
ttaaaaacaaggactctacaataaggtttaaagcaagaacaaatttagtcctacatcggggccactcttaagacattgagagatgagttaggttataaat |
8340081 |
T |
|
| Q |
328 |
aaagagtgtactagctccaaagatacaaacaaacaaaacacggttggg-gagtcccttattgtgttactttgttaagctaacgttcaaaattttaacaaa |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| || |
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|
| T |
8340080 |
aaagagtgtactagctccaaagatacaaacaaacaaaacactattgggtgagtcccttattgtgttactttgttaaactaacgttcaaaattttaaccaa |
8339981 |
T |
|
| Q |
427 |
aagcaatgcccaaatgaag--nnnnnnnntattgggtgtggctgggctggtatggcacttgccacactgggcctagttcaagtccatccttgctgttggt |
524 |
Q |
| |
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|||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
8339980 |
aagcaacgcccaaatgaagaaaaaaaatatattgggcgtggctgggctggtgtggcacttgccacactaggcctagttcaagtccgtccttgctgttgga |
8339881 |
T |
|
| Q |
525 |
gatgat |
530 |
Q |
| |
|
|||||| |
|
|
| T |
8339880 |
gatgat |
8339875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 194 - 364
Target Start/End: Original strand, 32161427 - 32161596
Alignment:
| Q |
194 |
agtttaaagaataagaaaagattgcctgcacattacttaaaaacaaaga-ctctacaataaggtttaaagcaagaacaaatttagtcctacatcagccac |
292 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| ||||||||| |||| ||||||| |||||| | | |
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|
| T |
32161427 |
agtttaaagaataagaaaagattgtctgcacattaccaaaaaacaaaaaactctacaataaggtt-aaagcaagatcaaacttagtcccacatcaactag |
32161525 |
T |
|
| Q |
293 |
tcttaagacattgagagatgagcaaggttataaataaagagtgtactagctccaaagatacaaacaaacaaa |
364 |
Q |
| |
|
| |||| |||||||||| |||| |||||||||||||||||| ||| |||| ||||||||||| ||||||| |
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|
| T |
32161526 |
ttttaatacattgagaggtgagttaggttataaataaagagtctacaagct-caaagatacaagtaaacaaa |
32161596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 3427481 - 3427534
Alignment:
| Q |
60 |
ccaaaacctaaaagctaaagtcaatttcaattttaatatagtaaccaaaattga |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
3427481 |
ccaaaacctaaaagctaaaatcaatttcaatttcaatatagtaatcaaaattga |
3427534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 38 - 509
Target Start/End: Complemental strand, 34404333 - 34403849
Alignment:
| Q |
38 |
aataattaaattactttttt--agccaaaacctaaaagctaaagtcaatttcaattttaatatagtaaccaaaattgatagtttatacaaaaa------g |
129 |
Q |
| |
|
||||||||||| | |||||| |||||||| |||||||||||| ||||||||||||| ||||||||||||||||| || |||||||| ||||| | |
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|
| T |
34404333 |
aataattaaataatttttttgtagccaaaatctaaaagctaaaatcaatttcaatttaaatatagtaaccaaaatagagagtttataaaaaaaaaaaaag |
34404234 |
T |
|
| Q |
130 |
agggaaaaagagagatgacctaaaacaaattgtctgtacattagcaaaataaaataaaattgggagtttaaagaataagaaaagattgcctgcacattac |
229 |
Q |
| |
|
| ||||||||||| | |||||||||||||||| || |||| | || |||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34404233 |
aaggaaaaagagaaacaacctaaaacaaattgtttgcacat----acaaaaaaaacaaattggaagtttaaagaataagaaaggattgcctgcacattac |
34404138 |
T |
|
| Q |
230 |
ttaaaaacaaagactctacaataaggtttaaagcaagaacaaatttagtcctacatcagccactcttaagacattgagagatgagcaaggttataaataa |
329 |
Q |
| |
|
||||| ||| |||| ||||||||||| |||||| ||| ||||||||||| ||||| |||||| ||||||||||||||||||||| || |||||||||| |
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|
| T |
34404137 |
c-aaaaagaaatactcaacaataaggtt-aaagcatgaagaaatttagtcccacatcggccacttttaagacattgagagatgagctagcttataaataa |
34404040 |
T |
|
| Q |
330 |
agagtgtactagctccaaagatacaaacaaacaaaacacggttggggagtcccttattgtgttactttgttaa----------gc-----taacgttcaa |
414 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| | |||| ||||||||||||| || ||| || |||||||||| |
|
|
| T |
34404039 |
agagtgta----ctccaaagatacaaacaaacaaaacattcttggtgggtcctttattgtgttactctgctaaaggttactctgctaaagtaacgttcaa |
34403944 |
T |
|
| Q |
415 |
aattttaacaaaaagcaatgcccaaatgaagnnnnnnnntattgggtgtggctgggctggtatggcacttgccacactgggcctagttcaagtcc |
509 |
Q |
| |
|
||| | ||||||||||| || |||||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
34403943 |
aatctgaacaaaaagcagtgtccaaataaaacaaaatattattgggtctggctgggctggtgtggcacttgccacactgggcctagttcaggtcc |
34403849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 509
Target Start/End: Original strand, 3100138 - 3100181
Alignment:
| Q |
466 |
ctgggctggtatggcacttgccacactgggcctagttcaagtcc |
509 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
3100138 |
ctgggctggtacgacacttgccacactgggcctagttcatgtcc |
3100181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 214 - 368
Target Start/End: Original strand, 34264206 - 34264362
Alignment:
| Q |
214 |
attgcctgcacattacttaaaaacaaagactctacaataaggtttaaagcaagaacaaatttagtcctacatcagccactcttaagacattgagagatga |
313 |
Q |
| |
|
|||| ||||||||||| ||||| ||| |||||||||||||||| ||||||||| ||||||||||| ||||| |||||| |||||| |||||||||||| |
|
|
| T |
34264206 |
attgtctgcacattacc-aaaaagaaatactctacaataaggtt-aaagcaagatgaaatttagtcccacatcggccacttttaagatattgagagatga |
34264303 |
T |
|
| Q |
314 |
gcaaggttataaataaagagt----gtactagctccaaagatacaaacaaacaaaacac |
368 |
Q |
| |
|
|| || ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34264304 |
gctagcttataaataaagagtgtacgtactagctccaaagatacaaacaaacaaaacac |
34264362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 364
Target Start/End: Complemental strand, 31529460 - 31529354
Alignment:
| Q |
257 |
ttaaagcaagaacaaatttagtcctacatcagccactcttaagacattgagagatgagcaaggttataaataaagagtgtactagctccaaagatacaaa |
356 |
Q |
| |
|
||||||||||| |||| ||||||| ||||| || | | |||| |||||||||| ||| | |||||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
31529460 |
ttaaagcaagatcaaacttagtcccacatcggctagttttaatacattgagaggtgaactaggttataaataaagagtctacaagct-caaagatacaag |
31529362 |
T |
|
| Q |
357 |
caaacaaa |
364 |
Q |
| |
|
||||||| |
|
|
| T |
31529361 |
taaacaaa |
31529354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 47509228 - 47509280
Alignment:
| Q |
57 |
tagccaaaacctaaaagctaaagtcaatttcaattttaatatagtaaccaaaat |
110 |
Q |
| |
|
|||| ||||||||||| ||||| | |||||||||||||||||||||| |||||| |
|
|
| T |
47509228 |
tagcgaaaacctaaaatctaaaat-aatttcaattttaatatagtaatcaaaat |
47509280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 42884778 - 42884730
Alignment:
| Q |
57 |
tagccaaaacctaaaagctaaagtcaatttcaattttaatatagtaacc |
105 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| | | |||||||| |
|
|
| T |
42884778 |
tagcaaaaacctaaaagctaaaatcaatttcaatttcagtgtagtaacc |
42884730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 7871188 - 7871220
Alignment:
| Q |
60 |
ccaaaacctaaaagctaaagtcaatttcaattt |
92 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
7871188 |
ccaaaacctaaaagctaaaatcaatttcaattt |
7871220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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