View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_15 (Length: 507)
Name: NF9753_2D_low_15
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 37204442 - 37203933
Alignment:
| Q |
1 |
catacttggacgtagttgtggatccctcattgtacatgcttttgctagttgtgccatctgcaaagtcgaaaaaatgaccaaacctttattaatgttgaaa |
100 |
Q |
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| T |
37204442 |
catacttggacgtagttgtggatccctcattgtacatgcttttgctagttgtgccatctgcaaagtcgaaaaaatgaccaaacctttattaatgttgaaa |
37204343 |
T |
|
| Q |
101 |
ccattatcatcaaaataaaataaaatttctta--cacaactggtaccttgcaaactgaatcaattgagtagttatctccaagtctaggatccaccagatt |
198 |
Q |
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| T |
37204342 |
ccattatcatcaaaataaaataaaatttcttatacacaactggtaccttgcaaactgaatcaattgagtagttatctccaagtctaggatccaccagatt |
37204243 |
T |
|
| Q |
199 |
ttttataccttctgttggatcttggtcatagccaaacacttcatcaaactgtcaaataaattaacaaaaaacttaacaagcaagaaaggaaaacgtttca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37204242 |
ttttataccttctgttggatcttggtcatagccaaacacttcatcaaactgtcaaataaattaacaaaaaacttaacaagcaagaaaggaaaacgtttca |
37204143 |
T |
|
| Q |
299 |
t--------------tatgtaagtaaaattcctattgatatgaatagtgatttggaacttttgt-cggtcttaacaaacatcatttatctttatgtaaaa |
383 |
Q |
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| T |
37204142 |
ttatgcttgcttatttatgtaagtaaaattcctattgatatgaatagtgatttggaacttttgtacagtcttaacaaacatcatttatctttatgtaaaa |
37204043 |
T |
|
| Q |
384 |
ttattaggatgccagttgaaaatcaccacagccacaagccctgttacttgaggaccatcattgattacagctgctttagcagaaataagttcatacagaa |
483 |
Q |
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| T |
37204042 |
ttattaggatgccagttgaaaatcaccacagccacaagccctgttacttgaggaccatcattgattacagctgctttagcagaaataagttcatacagaa |
37203943 |
T |
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| Q |
484 |
caacaccaaa |
493 |
Q |
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|||||||||| |
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| T |
37203942 |
caacaccaaa |
37203933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 493
Target Start/End: Complemental strand, 37198962 - 37198916
Alignment:
| Q |
447 |
attacagctgctttagcagaaataagttcatacagaacaacaccaaa |
493 |
Q |
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| T |
37198962 |
attacagctgctttagcagaaattagttcataaagaactactccaaa |
37198916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 37199230 - 37199176
Alignment:
| Q |
157 |
atcaattgagtagttatctccaagtctaggatccaccagattttttataccttct |
211 |
Q |
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| T |
37199230 |
atcaattggatagttatctccaagcctaggatccaccagttttttaagaccttct |
37199176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 37233700 - 37233622
Alignment:
| Q |
142 |
taccttgcaaactgaatcaattgagtagttatctccaagtctaggatccaccagattttttataccttctgttggatct |
220 |
Q |
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| T |
37233700 |
taccttgctaatggaatcaattgaatagttatctcctagccttggatccaccagctttcttagaccttctataggatct |
37233622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 37218361 - 37218312
Alignment:
| Q |
444 |
ttgattacagctgctttagcagaaataagttcatacagaacaacaccaaa |
493 |
Q |
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||||| || ||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
37218361 |
ttgatcactgctgctttagcagaaattagttcataaagaacaactccaaa |
37218312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 37224077 - 37224028
Alignment:
| Q |
444 |
ttgattacagctgctttagcagaaataagttcatacagaacaacaccaaa |
493 |
Q |
| |
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||||| || ||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
37224077 |
ttgatcactgctgctttagcagaaattagttcataaagaacaactccaaa |
37224028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 37384851 - 37384900
Alignment:
| Q |
444 |
ttgattacagctgctttagcagaaataagttcatacagaacaacaccaaa |
493 |
Q |
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||||| ||||||| |||||||||||| |||||||| |||||||| ||||| |
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| T |
37384851 |
ttgatcacagctggtttagcagaaattagttcataaagaacaactccaaa |
37384900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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