View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_17 (Length: 473)
Name: NF9753_2D_low_17
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 45 - 471
Target Start/End: Original strand, 19172561 - 19172987
Alignment:
| Q |
45 |
agaagtgaataacatattgcgttagcattatattttgttatttgtatgttatgtcgctgtgattgattgattgacttcttgagatattttaggatcaact |
144 |
Q |
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| T |
19172561 |
agaagtgaacaacatattgcgttagcattatattttgttatttgtatgttatgtcactgtgattgattgattgacttcttgagatattttaggatcgact |
19172660 |
T |
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| Q |
145 |
atgagattatgtgacattttaagtctagattctaactggttgattgttatttatttttgtaattgattacatgacttctttatttcaaaagtttgtaaat |
244 |
Q |
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| T |
19172661 |
atgagattatgtgacattttaagtctagattctaactcgttgattgttatttatttttgtaattgattacatgacttctttatttcaaaagtttgtaaat |
19172760 |
T |
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| Q |
245 |
gaaccaaatttgactatgttttcactatgttttactgtttgaaatgcttttggggtgaatggtgttacaacggcccgtagtatagagctgtaagggaagt |
344 |
Q |
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| T |
19172761 |
gaaccaaatttgactatgttttcactatgttttactgtttgaaatgcttttggggtgaatggtgttacaacggcccgtagtatagagctgtaagggaagt |
19172860 |
T |
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| Q |
345 |
tttggtaacgactttacaagcattgaggttgagttaagatacttgattggagattgatcttatctgatannnnnnnnnatttgaaaatatgttcacatgt |
444 |
Q |
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| T |
19172861 |
tttggtagcgactttacaagcattgaggttgagttaagatacttgattggagattgatcttatctgatatatttttttatttgaaaatatgttcgcatgt |
19172960 |
T |
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| Q |
445 |
atgatcatcactatggtttatgagtag |
471 |
Q |
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| T |
19172961 |
atgatcatcactatgatttatgagtag |
19172987 |
T |
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