View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_2 (Length: 1176)
Name: NF9753_2D_low_2
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 689; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 25 - 857
Target Start/End: Complemental strand, 38371387 - 38370553
Alignment:
| Q |
25 |
cttagaatgtagacattttgttaaaaacatgttatgtatgctaattttgcttagggcttgaaattctgaaaactctttcttgtgttgaatttgaaaatcc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38371387 |
cttagaatgtagacattttgttaaaaacatgttatgtatgctaattttgcttagggcttgaaattctgaaaactctttcttgtgttgaatttgaaaatcc |
38371288 |
T |
|
| Q |
125 |
agaaagcaaagatccagaagtgaagatacaaagcctaactattac---atgttcagtgaggcctgatcttgtcctgccaattccatttactaatgatcct |
221 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38371287 |
agaaagcaaagatccagaagtgaagatacaaagcctaactattactacatgttcagagagtcctgatcttgtcctgccaattccatttactaatgatcct |
38371188 |
T |
|
| Q |
222 |
aagaagagtctcttcattcttaaggaaggaagtcaatgtagaatgaaattcaccttcactgtctcaaacaacattgtttctggtctcaaatacaccaata |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38371187 |
aagaagagtctcttcattcttaaggaaggaagtcaatgtagaatgaaattcaccttcactgtctcaaacaacattgtttctggtctcaaatacaccaata |
38371088 |
T |
|
| Q |
322 |
ttgtttggaaaactggggttagaggtgcgacaaatactttcattttaatgaatttaaattaattaaatatcttagttagtaacatgggaatggatttgtt |
421 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38371087 |
ttgtttcgaaaactggggttagaggtgcgacaaatactttcattttaatgaatttaaattaattaaatatcttagttagtaacatgggaatggatttgtt |
38370988 |
T |
|
| Q |
422 |
gcaacagtggacagcagnnnnnnnntgttgggaacttttagtcctcagcatgaaccatatacatatgaattggaagaaaaaactactccttctggtatat |
521 |
Q |
| |
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| ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370987 |
gtaacagtgaacagcaggaaaaaaatgctgggaacttttagtcctcagcatgaaccatatacatatgaattggaagaaaaaactactccttctggtatat |
38370888 |
T |
|
| Q |
522 |
ttgctagaggaacctatgcagcaagaaccaaggtaaaattaatattcatcaagttgaatttcttatttgtttttcttggttaaataactcnnnnnnnnnn |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38370887 |
ttgctagaggaacctatgcagcaagaaccaaggtaaaattaatattcatcaagttgaatttcttatttgtttttcttggttaaataactc-ttttttttt |
38370789 |
T |
|
| Q |
622 |
nnnnnnnnnncttggttcagtttgtagatgatgataaaaaatgctacttggatgtgagttactactttgaaattcagaggaactggggaacacctaactg |
721 |
Q |
| |
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| T |
38370788 |
ttttctttttcttggttcagtttgtagatgatgataaaaaatgctacttggatgtgagttactactttgaaattcagaggaactggggaacacctaactg |
38370689 |
T |
|
| Q |
722 |
agtaatttggcatctattgtatctttctggaacagattggaactcaactttctgtttatcaatttgtgttatttccatgcatgctacattgctagc--ta |
819 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38370688 |
agtaatttggcatc--ttgtatctttctggaacagattggaactcaactttctgtttatcaatttgtgttatttccatgcatgctacattgctagctata |
38370591 |
T |
|
| Q |
820 |
tagtattcctccccctctcttttttctatggttccttt |
857 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
38370590 |
tagtattcctccccctctcttttttctatggttccttt |
38370553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 891 - 1155
Target Start/End: Complemental strand, 38370556 - 38370295
Alignment:
| Q |
891 |
ctttattgtgagtgttactgcccttttattcatctatgcaaagatgctcatagtgtaaatttttattaactgttagaatgtgaagagtggagattggata |
990 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370556 |
ctttattgtgagttttactgccctt--attcatctatgcaaagatgctcatagtgtaaatttttattaactgttagaatgtgaagagtggagattggata |
38370459 |
T |
|
| Q |
991 |
gaaatggggtccgtattggtggtccaaaaactcttcccatattaaggccacgtactcttttactaatggatgaaatcagaaaaaggaaaataaaggagac |
1090 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370458 |
gaaatggggtccgtattggtggtccaaaaactcttcctatattaaggccacgtactc-tttactaatggatgaaatcagaaaaaggaaaataaaggagac |
38370360 |
T |
|
| Q |
1091 |
aaagcataacttgtagtaatcaacaaccattttattttgtaagttaaagtaaacattagttgtta |
1155 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38370359 |
aaagcataacttgtagtaatcaacaacaattttattttgtaagttaaagtaaacattagttgtta |
38370295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 9e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 447 - 557
Target Start/End: Original strand, 34880517 - 34880627
Alignment:
| Q |
447 |
tgttgggaacttttagtcctcagcatgaaccatatacatatgaattggaagaaaaaactactccttctggtatatttgctagaggaacctatgcagcaag |
546 |
Q |
| |
|
|||||||||||| ||| || ||||| ||||||||||||||||||||||||||| ||| ||| ||||| || | |||||||||||||||||| ||||||| |
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| T |
34880517 |
tgttgggaacttatagcccacagcaggaaccatatacatatgaattggaagaagaaattaccccttcaggcttgtttgctagaggaacctattcagcaag |
34880616 |
T |
|
| Q |
547 |
aaccaaggtaa |
557 |
Q |
| |
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||||||||||| |
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| T |
34880617 |
aaccaaggtaa |
34880627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 267 - 353
Target Start/End: Original strand, 34880320 - 34880406
Alignment:
| Q |
267 |
aaattcaccttcactgtctcaaacaacattgtttctggtctcaaatacaccaatattgtttggaaaactggggttagaggtgcgaca |
353 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||||| |||| |||||||||| |||||||||||||||| |||||||||| |||| |
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| T |
34880320 |
aaattctccttcactgtctccaacaacatagtttctggcctcagatacaccaatgttgtttggaaaactggagttagaggtgagaca |
34880406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 447 - 560
Target Start/End: Original strand, 52894171 - 52894283
Alignment:
| Q |
447 |
tgttgggaacttttagtcctcagcatgaaccatatacatatgaattggaagaaaaaactactccttctggtatatttgctagaggaacctatgcagcaag |
546 |
Q |
| |
|
|||||||||||||||||| |||| || ||| |||||||||||||||||| |||| |||||||| ||||||||||||| ||| |||||||| ||| |
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| T |
52894171 |
tgttgggaacttttagtcgtcagtggaaaatataaacatatgaattggaagaagaaac-actccttcgagtatatttgctaggggagcctatgcactaag |
52894269 |
T |
|
| Q |
547 |
aaccaaggtaaaat |
560 |
Q |
| |
|
|||||||||||||| |
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|
| T |
52894270 |
aaccaaggtaaaat |
52894283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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