View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_21 (Length: 426)
Name: NF9753_2D_low_21
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 35317014 - 35317242
Alignment:
| Q |
1 |
cgaaaaattgagtgaagcaaattggtgacagattgaagtggtgtatcaaagatataaataagatagacacaactcagtgtttggaattatgcaagtgaga |
100 |
Q |
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| T |
35317014 |
cgaaaaattgagtgaagcaaattggtgacagagtgaagtggtgtatcaaagatataaataagatagacacaactcagtgtttggaattatgcaagtgaga |
35317113 |
T |
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| Q |
101 |
aagatagaggtgttttttcgatgctccaatagcataataggttgcaatcaacgagctatttgtttcaactttcacaacctacgttgaggttttgcttcag |
200 |
Q |
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| T |
35317114 |
aagatagaggtgttttttcgatgctccaatagcataataggttgcaatcaacgagctatttgtttcaactttcacaacctacgttgaggttttgcttcag |
35317213 |
T |
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| Q |
201 |
atagtacctaatgtgtatgaagaaagaga |
229 |
Q |
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| T |
35317214 |
atagtacctaatgtgtatgaagaaagaga |
35317242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 220 - 405
Target Start/End: Original strand, 35317263 - 35317448
Alignment:
| Q |
220 |
aagaaagagagtaaaaagatataaagatcgacacctggagaaagaatcgccggatcgattggggaaaacaaagcaccgttcaattgtggtgattaagaga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
35317263 |
aagaaagagagtaaaaagatataaagatcgacacctggagagagaatcgccggatcgattggggtaaacaaaacaccgttcaattgtggtgattaagaga |
35317362 |
T |
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| Q |
320 |
gagcggcggcggcgagaggtggtgatggagagcggattgcggtctcgtgtgaggaagattgtgctttctcagattgggtatagggt |
405 |
Q |
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| T |
35317363 |
gagcggcggcggcgagaggtggtgatggagagcggattgctgtctcgtgtgaggaagattgtgctttctcagattgggtatagggt |
35317448 |
T |
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