View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_24 (Length: 406)
Name: NF9753_2D_low_24
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 35879736 - 35879369
Alignment:
| Q |
17 |
cacacttgttcttgccaagtgaaaacaatcactgttgtccaagaagtgaaggcctgtagaaagcatgactttgtgcaattgcaatgcgttctcgtggatc |
116 |
Q |
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| T |
35879736 |
cacacttgttcttgccaagtgaaaacaatcactgttgtccaagaagtgaaggcctgtagaaagcatgactttgtgcaattgcaatgcgttctcgtggatc |
35879637 |
T |
|
| Q |
117 |
attcagattttcatccctcaaagcttttagaattgcatgtgttgattgttccctaagaaatcaaacatacaccagaagcataggaaacttatttaggata |
216 |
Q |
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| T |
35879636 |
attcagattttcatccctcaaagcttttagaattgcatgtgttgattgttctctaagaaatcaaacataaaccagaagcataggaaacttatttagtata |
35879537 |
T |
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| Q |
217 |
tttgcaaaatgcatagagattaccaaatgtattattatttggagtttgaagtgctcaaaagataacaagtttaaggtttttgttaattattcttttattg |
316 |
Q |
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| T |
35879536 |
tttgcaaaatgcatagagattaccaaatgtattattatttggagtttgaagtgctcaaaagataacaagtttaaggtttttgttaattattcttttattg |
35879437 |
T |
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| Q |
317 |
ctcaattttgttaattattgttaggagaatgattaccttgatatcaatattttgtagagtgtcttcaa |
384 |
Q |
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| T |
35879436 |
ctcaattttggtaattattgttaggagaatgattaccttgatatcaatattttgtagagtgtcttcaa |
35879369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 35903377 - 35903304
Alignment:
| Q |
60 |
aagtgaaggcctgtagaaagcatgactttgtgcaattgcaatgcgttctcgtggatcattcagattttcatccc |
133 |
Q |
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| T |
35903377 |
aagtgaaggactgtagaaaacatgactttatgcaattgcaatgcgtttttgtggatcattcagattttcatccc |
35903304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 35887355 - 35887291
Alignment:
| Q |
110 |
gtggatcattcagattttcatccctcaaagcttttagaattgcatgtgttgattgttccctaaga |
174 |
Q |
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|||||||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||||||| |
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| T |
35887355 |
gtggatcattcagattttcatctctcggagcttttagaatagcatgtgttgactgttccctaaga |
35887291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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