View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_27 (Length: 378)
Name: NF9753_2D_low_27
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 35316489 - 35316128
Alignment:
| Q |
1 |
tgttttattttcacacaatctacgaagcactaacacagagacacgacactgaaatggactcatcgacaacgttaaattttttaaaatagaattagttgaa |
100 |
Q |
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| T |
35316489 |
tgttttattttcacacaatctacgaagcactaacacagacacacgacactgaaatggactcatcgagaacgttaaattttttaaaatagaattagttgaa |
35316390 |
T |
|
| Q |
101 |
cgcaatacatgtttcggtctcgtgtcactgtcggacattggaagtgcctttctcgggtattgagatttgtagtcttacatcactgggtgtgtgtattttg |
200 |
Q |
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|| ||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35316389 |
cgtaatacatgtttcggtcttgtgtcactgtcggacatcggaaatgcctttctcgggtattgagatttgtagtcttacatcactgggtgtgtgtattttg |
35316290 |
T |
|
| Q |
201 |
cctcttactcttggttttattctcctatcaatttaggaaatggcatatttgttatactgctaacagtggcaacaagaaatgtggctgacattttcgagag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35316289 |
cctcttactcttggttttattctcctatcaatttaggaaatggcatatttgttatactgctaacagtggcaacaagaaatgtggctgacattttcgagag |
35316190 |
T |
|
| Q |
301 |
agaaaaatgatgtcattagaatgtgatacagtttcctgttggaaaatacacaacttcatgat |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35316189 |
agaaaaatgatgtcattagaatgtgatacagtttcctgttggaaaatacacaacttcatgat |
35316128 |
T |
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