View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_low_32 (Length: 323)

Name: NF9753_2D_low_32
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_low_32
NF9753_2D_low_32
[»] chr6 (1 HSPs)
chr6 (5-305)||(384422-384722)
[»] chr1 (17 HSPs)
chr1 (204-292)||(12532810-12532900)
chr1 (211-296)||(12540793-12540878)
chr1 (42-105)||(12535404-12535467)
chr1 (18-104)||(6326682-6326768)
chr1 (42-104)||(12532927-12532989)
chr1 (42-104)||(12540654-12540716)
chr1 (222-292)||(6326542-6326612)
chr1 (57-107)||(14470549-14470599)
chr1 (19-108)||(14508739-14508828)
chr1 (205-302)||(24621568-24621665)
chr1 (205-288)||(23787210-23787293)
chr1 (201-292)||(28231683-28231774)
chr1 (201-288)||(28239376-28239463)
chr1 (211-302)||(47569320-47569411)
chr1 (222-292)||(28326529-28326599)
chr1 (251-292)||(12538589-12538630)
chr1 (57-106)||(14507267-14507316)
[»] chr5 (1 HSPs)
chr5 (24-108)||(1717962-1718046)
[»] chr2 (2 HSPs)
chr2 (41-107)||(9068561-9068627)
chr2 (67-104)||(9066404-9066441)
[»] chr3 (1 HSPs)
chr3 (41-107)||(47924841-47924907)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 384722 - 384422
Alignment:
Q  5 ttaggaacattatgcctgatgttgtcacatatcggcatctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaatt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  384722 ttaggaacattatgcctgatgttgtcacatatcggcatctaatctatgtccattgcatcactcgtcaatttaaacaagcaattgccttgtttaaagaatt 384623  T
Q  105 ggagccatcggaagacatgaatccacgtacccctcttcctagtttagttaccaaattgaagccatccaaatacattgaaccaattacttatggtgttcct 204  Q
    ||||||||| |||||||||||||||  ||| ||||||||||||||||||||||| | ||| |||||||||| |||| |||||| ||||||  |||||||     
T  384622 ggagccatccgaagacatgaatccaactactcctcttcctagtttagttaccaagtcgaacccatccaaatgcattcaaccaaatacttacagtgttccc 384523  T
Q  205 actttagttacagaacaagaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgctagttgtcagtctgtga 304  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  384522 actttagttacagaacaagaggtcaaatctgctaaaagagccgtagctgtgctgattaaacgcggtgtcaaacctaatcttgctgcttgtcagtctgtga 384423  T
Q  305 t 305  Q
    |    
T  384422 t 384422  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 12532900 - 12532810
Alignment:
Q  204 tactttagttacagaacaagaggtgaaatctgctaaaa--gagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgctagtt 292  Q
    ||||||||||| ||||||||||||||||  ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12532900 tactttagttaaagaacaagaggtgaaaagtgctaaaaaagagcagtagctgtgctgataaaacgcggtgtcaaacctaatcttgctagtt 12532810  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 12540793 - 12540878
Alignment:
Q  211 gttacagaacaagaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgctagttgtca 296  Q
    ||||||||||||||||||| | |||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  12540793 gttacagaacaagaggtgacagctgctaaaagagcagttgctgttctgataaaacgcggtgtcaaacctgatcttgctagttgtca 12540878  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 12535467 - 12535404
Alignment:
Q  42 tctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaattg 105  Q
    ||||||||||| | |||||||||| |||||||||||||||||||||||| |||||| |||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaattgccatgtttagagaattg 12535404  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 6326768 - 6326682
Alignment:
Q  18 gcctgatgttgtcacatatcggcatctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaatt 104  Q
    ||||||||||||||| || |  ||||||||||||| | ||||||||   ||||||||| ||||||||||||||||||||||| ||||    
T  6326768 gcctgatgttgtcacttaccatcatctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgtttaaaaaatt 6326682  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 12532989 - 12532927
Alignment:
Q  42 tctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaatt 104  Q
    ||||||||||| | ||| |||||  ||||||||||||||||||||||||||||||||||||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgtttaaagaatt 12532927  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Original strand, 12540654 - 12540716
Alignment:
Q  42 tctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaatt 104  Q
    |||| |||||| | |||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatt 12540716  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 6326612 - 6326542
Alignment:
Q  222 agaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgctagtt 292  Q
    |||||| |||||||||||||  |||||||||||| |||| ||| ||||| ||||||||||| |||||||||    
T  6326612 agaggtcaaatctgctaaaactgcagtagctgtgatgataaaaggcggtctcaaacctaatgttgctagtt 6326542  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 14470599 - 14470549
Alignment:
Q  57 ttgcatcactggtcaatttaaacaagcaattgccttgtttaaagaattgga 107  Q
    |||||||| ||||||||||||| |||||||||||||||||| |||||||||    
T  14470599 ttgcatcattggtcaatttaaaaaagcaattgccttgtttagagaattgga 14470549  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 14508828 - 14508739
Alignment:
Q  19 cctgatgttgtcacatatcggcatctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaattggag 108  Q
    ||||||| | |||||||||   ||||||||||||   ||||||||   ||||||||||||||||||||||||||||||| | ||||||||    
T  14508828 cctgatgctatcacatatcataatctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttagaaaattggag 14508739  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 24621665 - 24621568
Alignment:
Q  205 actttagttacagaacaagaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgctagttgtcagtctgt 302  Q
    ||||||||||| ||||||||||||||||||| |||||| |||| | || || |||| |||   ||||||||||||||| ||||| ||| ||| |||||    
T  24621665 actttagttaccgaacaagaggtgaaatctgttaaaagtgcagcaactttgatgataaaagctggtgtcaaacctaatgttgcttgttatcaatctgt 24621568  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 23787210 - 23787293
Alignment:
Q  205 actttagttacagaacaagaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgct 288  Q
    ||||||||||| ||||||||||||||||||| |||||| |||| | || || |||| |||   ||||||||||||||| |||||    
T  23787210 actttagttaccgaacaagaggtgaaatctgttaaaagtgcagcaactttggtgataaaagctggtgtcaaacctaatgttgct 23787293  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 28231683 - 28231774
Alignment:
Q  201 tcctactttagttacagaacaagaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgctagtt 292  Q
    ||||||||||||||| |||  |||||||| |||||||||||| | || |||| || |||| ||| | ||||||||||||||  |||||||||    
T  28231683 tcctactttagttaccgaaggagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagtt 28231774  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 28239376 - 28239463
Alignment:
Q  201 tcctactttagttacagaacaagaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgct 288  Q
    ||||||||||||||| |||| ||| ||||||||||||| ||| |  | ||||||| |||| ||| | ||||||||||||||| |||||    
T  28239376 tcctactttagttaccgaacgagatgtgaaatctgctagaagtgtggcagctgtgatgataaaaggtggtgtcaaacctaatgttgct 28239463  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 47569320 - 47569411
Alignment:
Q  211 gttacagaacaagaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgctagttgtcagtctgt 302  Q
    ||||| |||||||||||||||||||||||| | ||||  ||| || |||| ||| |  ||||||||||||||  |||||||| ||| |||||    
T  47569320 gttaccgaacaagaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgctagttatcactctgt 47569411  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 28326529 - 28326599
Alignment:
Q  222 agaggtgaaatctgctaaaagagcagtagctgtgctgattaaacgcggtgtcaaacctaatcttgctagtt 292  Q
    ||||||||||||||||||||| | |||||||||  |||| ||| | ||| ||| ||||||| |||||||||    
T  28326529 agaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagtt 28326599  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 12538630 - 12538589
Alignment:
Q  251 ctgtgctgattaaacgcggtgtcaaacctaatcttgctagtt 292  Q
    |||||| ||| |||||||||||||||||| ||||||||||||    
T  12538630 ctgtgcagataaaacgcggtgtcaaacctgatcttgctagtt 12538589  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 14507316 - 14507267
Alignment:
Q  57 ttgcatcactggtcaatttaaacaagcaattgccttgtttaaagaattgg 106  Q
    |||||||  |||||||||| || |||||||||||||||||| ||||||||    
T  14507316 ttgcatcgttggtcaatttgaaaaagcaattgccttgtttagagaattgg 14507267  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 1717962 - 1718046
Alignment:
Q  24 tgttgtcacatatcggcatctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaattggag 108  Q
    ||||||||||||||   ||||||||||||   ||||||||  |||||||||||||||||||||||||||||||| | ||||||||    
T  1717962 tgttgtcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggag 1718046  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 9068561 - 9068627
Alignment:
Q  41 atctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaattgga 107  Q
    |||||||||||| | ||||||||  |||||||||||||||||   |||||||||||| |||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaagttgttgccttgtttagagaattgga 9068627  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 9066404 - 9066441
Alignment:
Q  67 ggtcaatttaaacaagcaattgccttgtttaaagaatt 104  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  9066404 ggtcaatttaaaccagcaattgccttgtttagagaatt 9066441  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 47924907 - 47924841
Alignment:
Q  41 atctaatctatgtccattgcatcactggtcaatttaaacaagcaattgccttgtttaaagaattgga 107  Q
    |||||||| ||| | |||||||||  ||| ||||||||||||| ||||||||| ||| |||||||||    
T  47924907 atctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgccttgcttagagaattgga 47924841  T

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