View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_low_35 (Length: 307)

Name: NF9753_2D_low_35
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_low_35
NF9753_2D_low_35
[»] chr7 (8 HSPs)
chr7 (37-294)||(17200619-17200876)
chr7 (1-41)||(4790884-4790924)
chr7 (1-41)||(11997329-11997369)
chr7 (1-41)||(20626978-20627018)
chr7 (1-41)||(20630869-20630909)
chr7 (1-41)||(20635477-20635517)
chr7 (1-41)||(20637349-20637389)
chr7 (1-41)||(38388146-38388186)
[»] chr8 (4 HSPs)
chr8 (170-264)||(43190938-43191032)
chr8 (4-41)||(39730701-39730738)
chr8 (1-41)||(20263469-20263509)
chr8 (1-41)||(21050098-21050138)
[»] chr5 (1 HSPs)
chr5 (127-210)||(25473683-25473766)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-43)||(60838-60880)
[»] chr6 (1 HSPs)
chr6 (178-264)||(34095036-34095122)
[»] scaffold0317 (1 HSPs)
scaffold0317 (4-41)||(14176-14213)
[»] chr2 (2 HSPs)
chr2 (179-264)||(38853819-38853904)
chr2 (1-41)||(23648733-23648773)
[»] chr1 (7 HSPs)
chr1 (123-204)||(17589674-17589755)
chr1 (141-238)||(52968547-52968644)
chr1 (1-41)||(22660050-22660090)
chr1 (1-41)||(41461782-41461822)
chr1 (1-41)||(46143535-46143575)
chr1 (1-41)||(49379638-49379678)
chr1 (179-271)||(50107170-50107262)
[»] scaffold0179 (1 HSPs)
scaffold0179 (1-41)||(33704-33744)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-41)||(14606-14646)
[»] chr4 (1 HSPs)
chr4 (1-41)||(9944995-9945035)
[»] chr3 (5 HSPs)
chr3 (1-41)||(1993508-1993548)
chr3 (1-41)||(1998667-1998707)
chr3 (1-41)||(3212598-3212638)
chr3 (1-41)||(5666594-5666634)
chr3 (1-41)||(21265073-21265113)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 37 - 294
Target Start/End: Complemental strand, 17200876 - 17200619
Alignment:
Q  37 gaaaaaatcattatcacatttcatcaacttggaatgcaaaatacaaaacaatgattcattgtgttattttaactttggataaattgccactttggtcgct 136  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17200876 gaaaaaatcattatcacatttcatcaacttggaattcaaaatacaaaacaacgattcattgtgttattttaactttggataaattgccactttggtctct 17200777  T
Q  137 gaccttgcatctcgctgtcacaatggttcgttactcaagacaaaatacaaaatagtctctagatgtgtacctctattatcaatttagtcattgacgttaa 236  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17200776 gaccttacatctcgctgtcacaatggttctttactcaagataaaatacaaaatagtctctggatgtgtacctctattatcaatttagtcattgacgttaa 17200677  T
Q  237 aaccttgtgttaactgatgaggtgacaacggttttgaatgatttggacgtgtgacgtg 294  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17200676 aaccttgtgttaactgatgaggtgacaatggttttgaatgatttggacgtgtgacgtg 17200619  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4790884 - 4790924
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  4790884 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 4790924  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11997329 - 11997369
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  11997329 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 11997369  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20627018 - 20626978
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  20627018 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 20626978  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20630909 - 20630869
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  20630909 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 20630869  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20635517 - 20635477
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  20635517 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 20635477  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20637389 - 20637349
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  20637389 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 20637349  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38388146 - 38388186
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  38388146 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 38388186  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 43190938 - 43191032
Alignment:
Q  170 ctcaagacaaaatacaaaatagtctctagatgtgtacctctattatcaatttagtcattgacgttaaaaccttgtgttaactgatgaggtgacaa 264  Q
    |||||||  ||||||||||||||||||  || ||||| ||| ||||||||||||||  ||||||||||| ||| |||||||||| ||||||||||    
T  43190938 ctcaagattaaatacaaaatagtctctgtatatgtacatctgttatcaatttagtctctgacgttaaaatcttttgttaactgacgaggtgacaa 43191032  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 39730701 - 39730738
Alignment:
Q  4 catagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  39730701 cataaaagtaaatcacaagaaagtaaaggaaaagaaaa 39730738  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20263509 - 20263469
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  20263509 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 20263469  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21050138 - 21050098
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  21050138 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 21050098  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 25473766 - 25473683
Alignment:
Q  127 tttggtcgctgaccttgcatctcgctgtcacaatggttcgttactcaagacaaaatacaaaatagtctctagatgtgtacctct 210  Q
    ||||||| |||||| ||||| |||||||||||||||| | | |||||||| |||||  ||||||||| ||||||||||||||||    
T  25473766 tttggtccctgaccatgcatatcgctgtcacaatggtccctgactcaagataaaatgtaaaatagtccctagatgtgtacctct 25473683  T

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Target: scaffold0072 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 60838 - 60880
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaaaa 43  Q
    ||||||| ||||||||  |||||||||||||||||||||||||    
T  60838 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaaaa 60880  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 34095036 - 34095122
Alignment:
Q  178 aaaatacaaaatagtctctagatgtgtacctctattatcaatttagtcattgacgttaaaaccttgtgttaactgatgaggtgacaa 264  Q
    |||||||||  ||||| |||||||||||| || ||||||| ||||||| ||||| ||||||  ||  |||||| |||||||| ||||    
T  34095036 aaaatacaaggtagtcactagatgtgtacgtccattatcagtttagtccttgacattaaaaatttccgttaacagatgaggttacaa 34095122  T

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Target: scaffold0317 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 14176 - 14213
Alignment:
Q  4 catagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  14176 cataaaagtaaatcacaagaaagtaaaggaaaagaaaa 14213  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 38853819 - 38853904
Alignment:
Q  179 aaatacaaaatagtctctagatgtgtacctctattatcaatttagtcattgacgttaaaaccttgtgttaactgatgaggtgacaa 264  Q
    ||||||||| ||||| ||| ||||| || ||  ||||||||||||||| ||||||||||   || |||||||| |||| |||||||    
T  38853819 aaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgttaaataattatgttaactcatgacgtgacaa 38853904  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23648773 - 23648733
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  23648773 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 23648733  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 17589755 - 17589674
Alignment:
Q  123 ccactttggtcgctgaccttgcatctcgctgtcacaatggttcgttactcaagacaaaatacaaaatagtctctagatgtgt 204  Q
    ||||||||||| ||||| ||||| ||||||| |||||||||   | ||||  || |||||||||||||||| || |||||||    
T  17589755 ccactttggtccctgactttgcacctcgctgacacaatggtctctaactccggataaaatacaaaatagtccctggatgtgt 17589674  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 52968547 - 52968644
Alignment:
Q  141 ttgcatctcgctgtcacaatggttcgttactcaagacaaaatacaaaatagtctctagatgtgtacctctattatcaatttagtcattgacgttaaaa 238  Q
    ||||| |||| |||||||||||| | | |||||||| ||||||||||||  || || ||||||||||||  || |||  |||||  ||||||||||||    
T  52968547 ttgcacctcgttgtcacaatggtacatgactcaagataaaatacaaaatgatcactggatgtgtacctccgttttcagcttagtgtttgacgttaaaa 52968644  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22660050 - 22660090
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  22660050 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 22660090  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41461822 - 41461782
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  41461822 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 41461782  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46143535 - 46143575
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  46143535 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 46143575  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49379638 - 49379678
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  49379638 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 49379678  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 50107262 - 50107170
Alignment:
Q  179 aaatacaaaatagtctctagatgtgtacctctattatcaatttagtcattgacgttaaaaccttgtgttaactgatgaggtgacaacggtttt 271  Q
    ||||||||||||||||||  ||||| || ||  |||||| ||||||| ||| |||||||   || |||||||||||||  |||||| ||||||    
T  50107262 aaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatgacatgacaaaggtttt 50107170  T

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Target: scaffold0179 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33744 - 33704
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  33744 aaacataaaagtaaatgacaagaaagtaaaggaaaagaaaa 33704  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14606 - 14646
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  14606 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 14646  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9945035 - 9944995
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  9945035 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 9944995  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1993548 - 1993508
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  1993548 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 1993508  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1998707 - 1998667
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  1998707 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 1998667  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3212638 - 3212598
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  3212638 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 3212598  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5666634 - 5666594
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  5666634 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 5666594  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21265073 - 21265113
Alignment:
Q  1 aaacatagaagtaaatcgcaagaaagtaaaggaaaagaaaa 41  Q
    ||||||| ||||||||  |||||||||||||||||||||||    
T  21265073 aaacataaaagtaaataacaagaaagtaaaggaaaagaaaa 21265113  T

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