View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_low_37 (Length: 298)

Name: NF9753_2D_low_37
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_low_37
NF9753_2D_low_37
[»] chr1 (5 HSPs)
chr1 (14-179)||(39759893-39760058)
chr1 (185-279)||(39769977-39770071)
chr1 (203-279)||(34978966-34979042)
chr1 (98-181)||(15802685-15802769)
chr1 (89-168)||(34979120-34979200)
[»] chr5 (1 HSPs)
chr5 (181-279)||(30087883-30087981)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 39759893 - 39760058
Alignment:
Q  14 acaatagcccgatacatagataatagcatactaaaataaattagcatttagattgaatatatgcaattgaaagagttacatttcttgtctctatctaaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39759893 acaatagcccgatacatagataatagcatactaaaataaataagcatttagattgaatatatgcaattgaaagagttacatttcttgtctctatgtaaag 39759992  T
Q  114 cttttcatgtcccttggtgatatatattagtggttacatttgccaatttaactttcatttaattta 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39759993 cttttcatgtcccttggtgatatatattagtggttacatttgccaatttaactttcatttaattta 39760058  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 39769977 - 39770071
Alignment:
Q  185 aaactttcttcctcctagagatgccacatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccac 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39769977 aaactttcttcctcctagagatgccacatcatcataattctagcttaacatacaaccaaagttagtttacaaagatgttaatctagagatgccac 39770071  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 34979042 - 34978966
Alignment:
Q  203 agatgccacatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccac 279  Q
    |||||||||||||||||||||||||||||  ||| ||| ||  ||||||||||||||||||||||||||||||||||    
T  34979042 agatgccacatcatcataattctagcttagaataaacctaagtttagtttacaaagatgttaatctagagatgccac 34978966  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 15802769 - 15802685
Alignment:
Q  98 ttgtctctatctaaagcttttcatgtcccttggt-gatatatattagtggttacatttgccaatttaactttcatttaatttaat 181  Q
    |||||||||| |||| |||| ||||| ||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  15802769 ttgtctctatgtaaacctttccatgtgccttggaagatatatagtagtggttacatttgcctatttaactttcatttaatttaat 15802685  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 34979200 - 34979120
Alignment:
Q  89 ttacatttcttgtctctatctaaagcttttcatgtcccttgg-tgatatatattagtggttacatttgccaatttaacttt 168  Q
    |||| |||||||| ||||| ||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  34979200 ttacgtttcttgtttctatgtaaagctttccatgtgccttggatgatatatattagtggttacatttgcctatttaacttt 34979120  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 279
Target Start/End: Original strand, 30087883 - 30087981
Alignment:
Q  181 tgtgaaactttcttcctcctagagatgccacatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccac 279  Q
    ||||||||||||||  |||| ||  ||||||||||||||||||||||||||| |||   ||| | || || ||||||||||||||||||||||||||||    
T  30087883 tgtgaaactttcttagtccttgaagtgccacatcatcataattctagcttaatatagttccatattttgtctacaaagatgttaatctagagatgccac 30087981  T

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