View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_38 (Length: 295)
Name: NF9753_2D_low_38
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 38169931 - 38170151
Alignment:
| Q |
8 |
aaattatactagtcttgaactaactaagcttgtgtttggataaacatttaccaatccaacaccgcgtcccaatgcacggttgctgtgaaaaatctgatgc |
107 |
Q |
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| T |
38169931 |
aaattatactagtcttgaattaactaagcttgtgtttggataaacatttaccaatccaaccccgcgtcccaatgcacggttgctgtgaaaaatctgatgc |
38170030 |
T |
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| Q |
108 |
taatatatcaagcttctgtgttgtcgtggtttcaaaatgcaattttatccaaatacgacaccaatccaaacatacaataagatgaagatgattcaacaaa |
207 |
Q |
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| T |
38170031 |
taatatatcaagcttctgtgttgtcatggtttc-caatgcaattttatccaaatacgacgccaatccaaacatacaataagatgaagatgattcaacaaa |
38170129 |
T |
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| Q |
208 |
aggttgtagatttgtagatgtt |
229 |
Q |
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|||||||||||||||||||||| |
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| T |
38170130 |
aggttgtagatttgtagatgtt |
38170151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 26135621 - 26135483
Alignment:
| Q |
39 |
gtgtttggataaacatttaccaatccaacaccgcgtcccaatgcacggttgctgtgaaaaatctgatgctaatatatcaagcttctgtgttgtcgtggtt |
138 |
Q |
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| T |
26135621 |
gtgtttggataagcgtttgccaatctaataccgcgtcccaatgcacggttgccgtgaaaattcagaagctagtatatcaagcttctgcattgccgtggtt |
26135522 |
T |
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| Q |
139 |
tcaaaatgcaattttatccaaatacgacaccaatccaaac |
178 |
Q |
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| T |
26135521 |
t-tcaacgccattttgtcctaatacgacaccaatccaaac |
26135483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 20791158 - 20791057
Alignment:
| Q |
38 |
tgtgtttggataaacatttaccaatccaacaccgcgtcccaatgcacggttgctgtgaaaaatctgatgctaatatatcaagcttctgtgttgtcgtggt |
137 |
Q |
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|||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||| || ||||| |||| ||||||||||||||| |||| ||| || |
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| T |
20791158 |
tgtgtttgaataaacatttgccaatccattaccgcgtcccaatgcacggttgccgtgagaattctgaagctagtatatcaagcttctgggttgccgtcgt |
20791059 |
T |
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| Q |
138 |
tt |
139 |
Q |
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|| |
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| T |
20791058 |
tt |
20791057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 26937592 - 26937668
Alignment:
| Q |
59 |
caatccaacaccgcgtcccaatgcacggttgctgtgaaaaatctgatgctaatatatcaagcttctgtgttgtcgtg |
135 |
Q |
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| T |
26937592 |
caatccaatactgcgtcccaatgcacggtcaccgtgaaaattctgaagctagtatgtcaagcttctgtgttgccgtg |
26937668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 184
Target Start/End: Original strand, 41535491 - 41535616
Alignment:
| Q |
58 |
ccaatccaacaccgcgtcccaatgcacggttgctgtgaaaaatctgatgctaatatatcaagcttctgtgttgtcgtggtttcaaaatgcaattttatcc |
157 |
Q |
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|||| |||| ||||| || ||| ||| ||| | |||| ||| ||||| |||| |||||||||||||||||||| | |||||| || || ||||| || |
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| T |
41535491 |
ccaaaccaataccgcttcgcaaagcatggtggttgtggaaattctgaagctagtatatcaagcttctgtgttgccatggttt-tcaacgcgattttgtct |
41535589 |
T |
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| Q |
158 |
aaatacgacaccaatccaaacatacaa |
184 |
Q |
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| T |
41535590 |
aaatacgacgccaatccaaacatacaa |
41535616 |
T |
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