View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_4 (Length: 773)
Name: NF9753_2D_low_4
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 17 - 755
Target Start/End: Original strand, 34444136 - 34444874
Alignment:
| Q |
17 |
atgaagattcaagcctgggaaaatcatcagataagaaaagctgaaatggaaatgaagaaaatggaggtactattgtgattcttttagcaacatacatttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444136 |
atgaagattcaagcctgggaaaatcatcagataagaaaagctgaaatggaaatgaagaaaatggaggtactattgtgattcttttagcaacatacatttt |
34444235 |
T |
|
| Q |
117 |
taagaaaatcacattctccacagtttggattcacaattacttcagcgtaatcagagtgt--cactctaattttgataaaaattacactttaaaacttcaa |
214 |
Q |
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|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34444236 |
taagaaaatcacattctcaaaagtttggattcacaattagttcagcgtaatcagagtgtgtcactctaattttgataaaaattacactttaaaacttcaa |
34444335 |
T |
|
| Q |
215 |
caaaattatggagtgaccgtgatttcttccaaacatccatgtggtagcttttgtgttggcattgtggtgcaattgtttcccttcaattattgctaa-tga |
313 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34444336 |
caaaattatggagtgaccatgatttcttccaaacatccatgtggtagcttttgtgttggcattgtggtgcaattgtttcccttcaattattgctaaatga |
34444435 |
T |
|
| Q |
314 |
taccaaccttttctaaggcatctcatttgatgatggctcatcttttcatgttctactttcaatgtttacaaaactatgatgacagaattcataagtatag |
413 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444436 |
taccaaccttttctaaggcatttcatttgatgatggctcatcttttcatgttctactttcaatgtttacaaaactatgatgacagaattcataagtatag |
34444535 |
T |
|
| Q |
414 |
agttgaaagttctgtgaaaatacactgacaaagagaattattcctgaaaagtactaagacatggcaggcacctttcccaacgtactgaatacaaaacagt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34444536 |
agttgaaagttctgtgaaaatacactgacaaagagaattattcctgaaaagtactaagacatggcaggcacctttcccaacgtactgaatacaaaacaat |
34444635 |
T |
|
| Q |
514 |
actactatttatgtttggaaagcaccactttagatagatatcatgaatccaatgaaatattcagtcacaacaactaacaagcgaacctattcgatagctc |
613 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
34444636 |
act---atttatgtttggaaagcaccactttagatagatatcatgaatccaatgaaatattcagtcacaacaactaacaagagaacctatttgatagctc |
34444732 |
T |
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| Q |
614 |
cataacagtacattactgattcatatttcatagtgatactctatcctatgtgagaatctagcccaagcaacagacatgcgttgctttcatgagttggcat |
713 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444733 |
cataacagtacattactgattcatatttcatagtgatactctatcctatgtgagaatctagcccaagcaacagacatgcgttgctttcatgagttggcag |
34444832 |
T |
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| Q |
714 |
tggcaccaggtgctcaatttaatgagtactagtagtttcttt |
755 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34444833 |
tggcaccaggtgctcaatttaatgagtactagtagtttcttt |
34444874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 596 - 741
Target Start/End: Original strand, 4456891 - 4457030
Alignment:
| Q |
596 |
gaacctattcgatagctccataacagtacattactgattcatatttcatagtgatactctatcctatgtgagaatctagcccaagcaacagacatgcgtt |
695 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |
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| T |
4456891 |
gaacctatttgatagctccataacagtacattgctgattcatatttcatagtgatactctattctatgtgagaatctagcctaagcaacagtcatgcgtt |
4456990 |
T |
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| Q |
696 |
gctttcatgagttggcattggcaccaggtgctcaatttaatgagta |
741 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4456991 |
gctttcatgag------ttggcaccaggtgctcaatttaatgagta |
4457030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 5084055 - 5084094
Alignment:
| Q |
181 |
taattttgataaaaattacactttaaaacttcaacaaaat |
220 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| |
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| T |
5084055 |
taattttgataaaatttacactttaaaatttcaacaaaat |
5084094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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