View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_low_40 (Length: 286)

Name: NF9753_2D_low_40
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_low_40
NF9753_2D_low_40
[»] chr4 (5 HSPs)
chr4 (11-271)||(1600727-1600987)
chr4 (107-188)||(55908337-55908418)
chr4 (31-189)||(3438186-3438343)
chr4 (107-188)||(1527812-1527893)
chr4 (135-187)||(641321-641373)
[»] chr6 (5 HSPs)
chr6 (118-188)||(7993805-7993875)
chr6 (112-218)||(6588949-6589055)
chr6 (116-182)||(6596567-6596633)
chr6 (29-149)||(8913599-8913723)
chr6 (116-188)||(6432557-6432629)
[»] chr2 (1 HSPs)
chr2 (107-188)||(1037273-1037354)
[»] scaffold0262 (1 HSPs)
scaffold0262 (107-188)||(326-407)
[»] chr1 (2 HSPs)
chr1 (28-156)||(19468038-19468166)
chr1 (79-187)||(33160914-33161022)
[»] scaffold0014 (1 HSPs)
scaffold0014 (159-218)||(89137-89196)
[»] chr5 (1 HSPs)
chr5 (107-218)||(28532084-28532195)
[»] chr8 (1 HSPs)
chr8 (107-217)||(17627668-17627778)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 11 - 271
Target Start/End: Complemental strand, 1600987 - 1600727
Alignment:
Q  11 ttatactggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttg 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1600987 ttatattggagtagttagtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccttgttg 1600888  T
Q  111 acttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttactta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600887 acttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttactta 1600788  T
Q  211 atgagatcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgtgttgtaaa 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600787 atgagatcgtaatggcatgcgcaaatattgcatatgaaagagtagggaattgtgttgtaaa 1600727  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 55908337 - 55908418
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  55908337 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactc 55908418  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 189
Target Start/End: Original strand, 3438186 - 3438343
Alignment:
Q  31 tgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcgtttcttggtgattt 130  Q
    ||||||||||||||||| |||| |||||||||| |||| ||| | |  | ||| | || ||||||||||||| |  |||| |   ||||| |||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatcttcaaaaa-cttactttctaaatgatcgccatgttgtcaagttgtccatgtttcatggtgattt 3438284  T
Q  131 ggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactca 189  Q
    ||| ||||||||||||||||| |||   ||||||||| ||| |||||| ||| ||||||    
T  3438285 ggtgtctataaaccttagtgattgttcgatgctcacaaaattagccttattttcactca 3438343  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 1527812 - 1527893
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||||||||||| |||||||| | ||||||||| ||||| |||||  ||  |||||| | | ||||||||||||||||    
T  1527812 gttgtcttcgtttcttagtgatttgttgtctataaacattagtaaatgtgatagcctcacacatttagccttgtttgcactc 1527893  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 641373 - 641321
Alignment:
Q  135 tctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcact 187  Q
    ||||||||||||||| | ||| ||| ||||||| ||||| |||||||||||||    
T  641373 tctataaaccttagtcattgtggtaagctcacaaaatcaaccttgtttgcact 641321  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 7993805 - 7993875
Alignment:
Q  118 ttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  7993805 ttcttggtgatttggtgtctataaaccttagtgaatgtcggatgctcacagaatcagccttgttttcactc 7993875  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 6588949 - 6589055
Alignment:
Q  112 cttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaa 211  Q
    |||| ||||||||||||||||| ||  ||||||||||| | || |||| | ||||||||||||| |||||||||||   |  ||||||||||||||||      
T  6588949 cttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgtttgcacttgctaggaagtgtcctttacttgg 6589048  T
Q  212 tgagatc 218  Q
    |||||||    
T  6589049 tgagatc 6589055  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 6596567 - 6596633
Alignment:
Q  116 gtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgttt 182  Q
    |||||||||||||||||||||||||||||||| | | |||   | |||||||||||||||| |||||    
T  6596567 gtttcttggtgatttggtttctataaaccttaatcattgttcaaggctcacagaatcagccgtgttt 6596633  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 149
Target Start/End: Original strand, 8913599 - 8913723
Alignment:
Q  29 tttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattt----tttgaaagatcgccatgttgccctgttgacttcgtttcttgg 124  Q
    ||||||||||||||||||| || | ||||||||||||||||| ||  |  ||||    | |||| ||||  ||||||| |  |||| ||| |||||||||    
T  8913599 tttgttatccaagtgtcaatgtttacaacatttggttcttaatagcacttattttatatatgaatgatcaacatgttgtcaagttgtctttgtttcttgg 8913698  T
Q  125 tgatttggtttctataaaccttagt 149  Q
    | ||||||| |||||||||||||||    
T  8913699 taatttggtgtctataaaccttagt 8913723  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 6432629 - 6432557
Alignment:
Q  116 gtttcttggtgatttggtttctataaaccttagtgaatgtag-tatgctcacagaatcagccttgtttgcactc 188  Q
    |||||||| ||||||||| ||||||||||||||| | ||| | ||| ||||||||||||||| ||||| |||||    
T  6432629 gtttcttgctgatttggtgtctataaaccttagtaattgtcgatat-ctcacagaatcagccctgttttcactc 6432557  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 1037273 - 1037354
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| |||||||||||    
T  1037273 gttgtctttgtttcttggtgatttggtgtctataaaccttagtgaatgtagcatgctcacagactcggccatgtttgcactc 1037354  T

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Target: scaffold0262 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 188
Target Start/End: Complemental strand, 407 - 326
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactc 188  Q
    |||| ||| ||||||||| |||||||| |||||||| |||||||||||||| ||||||||| | ||| || |||||||||||    
T  407 gttgtctttgtttcttggcgatttggtgtctataaatcttagtgaatgtagcatgctcacatactcaaccatgtttgcactc 326  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 19468038 - 19468166
Alignment:
Q  28 gtttgttatccaagtgtcaacgtatccaacatttggttcttaaaagagccgattttttgaaagatcgccatgttgccctgttgacttcgtttcttggtga 127  Q
    |||||||||||||||||  | || | |||||||||| |||| || | || |  |||||||| |||| | ||||||    |||| ||| ||||||||||||    
T  19468038 gtttgttatccaagtgtgcaggtttgcaacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtga 19468137  T
Q  128 tttggtttctataaaccttagtgaatgta 156  Q
    ||| || ||||||||||||||||||||||    
T  19468138 tttagtgtctataaaccttagtgaatgta 19468166  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 187
Target Start/End: Complemental strand, 33161022 - 33160914
Alignment:
Q  79 attttttgaaagatcgccatgttgccctgttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagcctt 178  Q
    ||||| |||| ||||  |||||||||  |||  ||| |||||||| || |||||| ||||||||||||| || |||| | | ||||||||||||||| ||    
T  33161022 attttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcatt 33160923  T
Q  179 gtttgcact 187  Q
    |||| ||||    
T  33160922 gttttcact 33160914  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 89196 - 89137
Alignment:
Q  159 atgctcacagaatcagccttgtttgcactcaatgagaagtgtcctttacttaatgagatc 218  Q
    ||||||||||| ||||||||||||||||||||| |||| | ||||| ||| | |||||||    
T  89196 atgctcacagactcagccttgtttgcactcaattagaactatccttcactcagtgagatc 89137  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 28532195 - 28532084
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtccttta 206  Q
    |||| |||||||||||||||||||| | || || ||||||||| | |||  || ||| ||||||||| | ||||||||||||  |  ||| |||||||||    
T  28532195 gttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaattgtgataagctaacagaatcatctttgtttgcactcgctaggaactgtccttta 28532096  T
Q  207 cttaatgagatc 218  Q
    |||  |||||||    
T  28532095 cttggtgagatc 28532084  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 17627668 - 17627778
Alignment:
Q  107 gttgacttcgtttcttggtgatttggtttctataaaccttagtgaatgtagtatgctcacagaatcagccttgtttgcactcaatgagaagtgtccttta 206  Q
    |||| |||| ||||||||| ||||||| ||| ||||||||||| | ||| | ||||||   ||||||||||||||| |||||  |   || ||||||| |    
T  17627668 gttgtcttcatttcttggtaatttggtgtctgtaaaccttagttattgtcggatgctcgacgaatcagccttgttttcactcgttagtaaatgtccttca 17627767  T
Q  207 cttaatgagat 217  Q
    |||||||||||    
T  17627768 cttaatgagat 17627778  T

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