View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_low_41 (Length: 268)

Name: NF9753_2D_low_41
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_low_41
NF9753_2D_low_41
[»] scaffold1432 (1 HSPs)
scaffold1432 (1-251)||(799-1040)
[»] chr1 (7 HSPs)
chr1 (32-109)||(35536769-35536846)
chr1 (41-91)||(12178099-12178149)
chr1 (28-69)||(10645788-10645829)
chr1 (46-109)||(31061253-31061316)
chr1 (32-89)||(3142938-3142995)
chr1 (32-92)||(3371645-3371705)
chr1 (34-70)||(28843244-28843280)
[»] chr8 (7 HSPs)
chr8 (6-108)||(32884526-32884628)
chr8 (18-108)||(32879693-32879783)
chr8 (26-73)||(31599874-31599921)
chr8 (30-92)||(30525219-30525281)
chr8 (37-86)||(13532897-13532946)
chr8 (37-86)||(13622437-13622486)
chr8 (28-92)||(28883671-28883735)
[»] chr4 (11 HSPs)
chr4 (43-109)||(55240439-55240505)
chr4 (32-105)||(55240630-55240703)
chr4 (28-86)||(18523225-18523283)
chr4 (40-93)||(4316018-4316071)
chr4 (33-73)||(34542405-34542445)
chr4 (28-92)||(36165468-36165532)
chr4 (41-92)||(18523024-18523075)
chr4 (41-109)||(9928964-9929033)
chr4 (32-69)||(11785031-11785068)
chr4 (29-109)||(41389425-41389505)
chr4 (29-97)||(44019610-44019678)
[»] chr7 (4 HSPs)
chr7 (32-104)||(23972462-23972534)
chr7 (32-92)||(8745877-8745937)
chr7 (31-70)||(35035249-35035288)
chr7 (34-96)||(2911964-2912026)
[»] chr6 (2 HSPs)
chr6 (30-92)||(10742249-10742311)
chr6 (34-108)||(11340005-11340079)
[»] chr3 (7 HSPs)
chr3 (11-109)||(30135500-30135598)
chr3 (11-109)||(30141629-30141727)
chr3 (11-109)||(30145051-30145149)
chr3 (16-109)||(30130780-30130873)
chr3 (32-89)||(36236576-36236632)
chr3 (32-109)||(50196900-50196977)
chr3 (33-73)||(20995747-20995787)
[»] chr2 (3 HSPs)
chr2 (32-84)||(43829620-43829672)
chr2 (41-70)||(30841581-30841610)
chr2 (31-108)||(35469415-35469492)
[»] chr5 (3 HSPs)
chr5 (6-108)||(28431955-28432057)
chr5 (39-89)||(8402141-8402191)
chr5 (32-93)||(6423984-6424045)
[»] scaffold0557 (1 HSPs)
scaffold0557 (32-93)||(3924-3985)
[»] scaffold0442 (2 HSPs)
scaffold0442 (32-93)||(1547-1608)
scaffold0442 (32-93)||(7662-7723)
[»] scaffold0236 (1 HSPs)
scaffold0236 (39-91)||(22413-22465)
[»] scaffold0549 (2 HSPs)
scaffold0549 (34-108)||(1104-1178)
scaffold0549 (34-108)||(3194-3268)


Alignment Details
Target: scaffold1432 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 1040 - 799
Alignment:
Q  1 tgttagtctcatatcgctcaggatcatgggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtct 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1040 tgttagtctcatatcgctcaggatcataggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtct 941  T
Q  101 atttaacataaatcacatccacttcaagccgcattttgagaagagatttaagcggcccatttaccataaatcacctcctccttgaagttgcatttttatt 200  Q
    |||||||||||||||||||| ||| |||| ||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  940 atttaacataaatcacatcctcttgaagctgcattttgagaagagatttaag---------taccataaatcacctcctccttgaagttgcatttttatt 850  T
Q  201 aaaaactattcaaaataacttctcgttttaatcatgtttttaaattttatt 251  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  849 aaaaactattcaaaacaacttctcattttaatcatgtttttaaattttatt 799  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 35536846 - 35536769
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    |||||||||||||||||||||  |||||||||||| ||||||| | |||||||||||||||| ||||| |||||||||    
T  35536846 tgttgaatgtataaatatgttcaagtatcctcatcatttgagttaacttttgggatgagattgaagtccatttaacat 35536769  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 12178149 - 12178099
Alignment:
Q  41 tataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgaga 91  Q
    |||||||||||||||||| |||||||||||||   ||||||||||||||||    
T  12178149 tataaatatgtttgagtaccctcatcctttgacctagcttttgggatgaga 12178099  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 10645788 - 10645829
Alignment:
Q  28 gggttgttgaatgtataaatatgtttgagtatcctcatcctt 69  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  10645788 gggttgttgagtgtataaatatgtttgagtaccctcatcctt 10645829  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 31061253 - 31061316
Alignment:
Q  46 atatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    |||| |||||||||| ||||| ||||||| ||||||| | |||||||| ||| |||||||||||    
T  31061253 atatatttgagtatcatcatcttttgagttagcttttagaatgagattcaagcctatttaacat 31061316  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 3142938 - 3142995
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatga 89  Q
    ||||||||||||||||||| | ||||| | |||| ||| |||| ||||||||||||||    
T  3142938 tgttgaatgtataaatatgctcgagtaccttcattcttcgagttagcttttgggatga 3142995  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 3371645 - 3371705
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagat 92  Q
    |||||| |||||| | ||| ||||||| ||||||| ||||||  |||||||||||||||||    
T  3371645 tgttgagtgtatacacatgcttgagtaccctcatcttttgaggtagcttttgggatgagat 3371705  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 28843280 - 28843244
Alignment:
Q  34 ttgaatgtataaatatgtttgagtatcctcatccttt 70  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  28843280 ttgaatgtataaatatttttgaatatcctcatccttt 28843244  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 32884628 - 32884526
Alignment:
Q  6 gtctcatatcgctcaggatcatgggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctattta 105  Q
    |||||| || ||||||| ||||||| |||  | ||| |||||||||||||||||||||||||||| ||| || ||||||||||| ||| ||| |||||||    
T  32884628 gtctcacattgctcaggttcatgggatgtcaagtgtttaaatatgtttgagtatcctcatcctttaagttagtttttgggatgaaattcaagactattta 32884529  T
Q  106 aca 108  Q
    |||    
T  32884528 aca 32884526  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 32879783 - 32879693
Alignment:
Q  18 tcaggatcatgggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaaca 108  Q
    ||||| ||||||| |||  | ||| |||||||||| ||||| ||||||||||| ||| || ||||||||||||||| ||| ||||||||||    
T  32879783 tcaggttcatgggatgtcaagtgtttaaatatgttcgagtaccctcatcctttaagttagtttttgggatgagattcaagactatttaaca 32879693  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 31599874 - 31599921
Alignment:
Q  26 atgggttgttgaatgtataaatatgtttgagtatcctcatcctttgag 73  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||    
T  31599874 atgggttgttgaatgtataaatatgtttgagtactttcatcctttgag 31599921  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 30525219 - 30525281
Alignment:
Q  30 gttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagat 92  Q
    |||||| | ||||||||||||||||||||  ||||| |||||||  |||||||||||||||||    
T  30525219 gttgtttagtgtataaatatgtttgagtactctcattctttgagctagcttttgggatgagat 30525281  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 13532946 - 13532897
Alignment:
Q  37 aatgtataaatatgtttgagtatcctcatcctttgagtgagcttttggga 86  Q
    ||||||||||||||||||||| | |||||||||| ||  |||||||||||    
T  13532946 aatgtataaatatgtttgagtcttctcatcctttaagctagcttttggga 13532897  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 13622486 - 13622437
Alignment:
Q  37 aatgtataaatatgtttgagtatcctcatcctttgagtgagcttttggga 86  Q
    ||||||||||||||||||||| | |||||||||| ||  |||||||||||    
T  13622486 aatgtataaatatgtttgagtcttctcatcctttaagctagcttttggga 13622437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 28883735 - 28883671
Alignment:
Q  28 gggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagat 92  Q
    |||||||| | |||||||||||||||||||| |||||| ||  |||  |||||||| ||||||||    
T  28883735 gggttgttaagtgtataaatatgtttgagtaccctcattctccgaggtagcttttgagatgagat 28883671  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 55240439 - 55240505
Alignment:
Q  43 taaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||| ||| | |||||||||    
T  55240439 taaatatacttgagtatcctcatcctttgagttagcttttgggatgagattcaagccaatttaacat 55240505  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 55240630 - 55240703
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctattta 105  Q
    |||||| | |||||||||| ||||||| ||||||| |||||| ||||||||||||||||||  || ||||||||    
T  55240630 tgttgagtatataaatatgcttgagtaccctcatcttttgagcgagcttttgggatgagatccaaatctattta 55240703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 18523283 - 18523225
Alignment:
Q  28 gggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttggga 86  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||  | |||||||||    
T  18523283 gggttgttgaacatataaatatgtttgagtaccctcatcctttgaggtatcttttggga 18523225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 4316071 - 4316018
Alignment:
Q  40 gtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatt 93  Q
    ||||||||||| |||| |||||||||||||||||| |||| ||||| |||||||    
T  4316071 gtataaatatgattgaatatcctcatcctttgagttagctgttgggttgagatt 4316018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 34542445 - 34542405
Alignment:
Q  33 gttgaatgtataaatatgtttgagtatcctcatcctttgag 73  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  34542445 gttgagtgtataaatatgtttgagtatcatcatcctttgag 34542405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 36165532 - 36165468
Alignment:
Q  28 gggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagat 92  Q
    |||||||||| |||||||| ||||||||||| ||||||| |||| |  || ||||||||||||||    
T  36165532 gggttgttgagtgtataaagatgtttgagtaccctcatcttttgtgctagattttgggatgagat 36165468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 18523075 - 18523024
Alignment:
Q  41 tataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagat 92  Q
    |||||||||| ||||||| | |||||||||||| |||||||||| |||||||    
T  18523075 tataaatatgcttgagtaccatcatcctttgagcgagcttttggtatgagat 18523024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 9929033 - 9928964
Alignment:
Q  41 tataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatt-taagtctatttaacat 109  Q
    |||||||||||||||||||||||||| ||||||  | ||||||| || |||||  ||| |||||||||||    
T  9929033 tataaatatgtttgagtatcctcatcttttgagctaacttttggaataagattccaagcctatttaacat 9928964  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 11785031 - 11785068
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctt 69  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  11785031 tgttgagtgtataaatatgtttgagtaccctcatcctt 11785068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 41389505 - 41389425
Alignment:
Q  29 ggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    ||||||||||||||||||||| ||| |||  ||| ||||||||||  | |||||| ||| ||||| ||  |||||||||||    
T  41389505 ggttgttgaatgtataaatatatttcagtccccttatcctttgagctaccttttgagattagattcaaacctatttaacat 41389425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 44019678 - 44019610
Alignment:
Q  29 ggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaag 97  Q
    |||||||  |||||||||| |||||| | | ||||||||||||||  | ||||||||||||||| ||||    
T  44019678 ggttgtttgatgtataaatgtgtttgggcaccctcatcctttgagctaacttttgggatgagatctaag 44019610  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 23972462 - 23972534
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctattt 104  Q
    |||||||  |||||||||||||||||| ||||||||||||||| | ||||||| |||||||| ||| ||||||    
T  23972462 tgttgaacatataaatatgtttgagtaccctcatcctttgagttaacttttggaatgagattcaagcctattt 23972534  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 8745937 - 8745877
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagat 92  Q
    |||||| |||||||||||||| ||||||||||||||||| ||  | |||||||||||||||    
T  8745937 tgttgagtgtataaatatgttcgagtatcctcatcctttaagctaacttttgggatgagat 8745877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 35035288 - 35035249
Alignment:
Q  31 ttgttgaatgtataaatatgtttgagtatcctcatccttt 70  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  35035288 ttgttgagtgtataaatatgtttgagtagcctcatccttt 35035249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 2912026 - 2911964
Alignment:
Q  34 ttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaa 96  Q
    |||| ||||||||||||||||| || | ||||| ||||||| ||  |||||||||||||||||    
T  2912026 ttgagtgtataaatatgtttgaataccttcatcatttgagttagggtttgggatgagatttaa 2911964  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 10742249 - 10742311
Alignment:
Q  30 gttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagat 92  Q
    ||||||||||||||||||||||||| ||| ||| ||| ||||| | |||||||||||||||||    
T  10742249 gttgttgaatgtataaatatgtttgggtaccctaatcatttgatttagcttttgggatgagat 10742311  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 11340005 - 11340079
Alignment:
Q  34 ttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaaca 108  Q
    |||| ||||||||||||| |||||||||  ||||||||||  || |||| |||| |||| ||| |||||||||||    
T  11340005 ttgagtgtataaatatgtctgagtatccatatcctttgagctagtttttaggatcagatctaactctatttaaca 11340079  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 30135598 - 30135500
Alignment:
Q  11 atatcgctcaggatcatgggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    |||||||||| | || | || ||||| ||||||||||||| ||||||| ||||||| ||||||  | |||||||||||||||  ||| |||||||||||    
T  30135598 atatcgctcaagttcttaggctgttggatgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30135500  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 30141727 - 30141629
Alignment:
Q  11 atatcgctcaggatcatgggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    |||||||||| | || | || ||||| ||||||||||||| ||||||| ||||||| ||||||  | |||||||||||||||  ||| |||||||||||    
T  30141727 atatcgctcaagttcttaggctgttggatgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30141629  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 30145149 - 30145051
Alignment:
Q  11 atatcgctcaggatcatgggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    |||||||||| | || | || ||||| ||||||||||||| ||||||| ||||||| ||||||  | |||||||||||||||  ||| |||||||||||    
T  30145149 atatcgctcaagttcttaggctgttggatgtataaatatgcttgagtaccctcatcatttgagctaacttttgggatgagatccaagcctatttaacat 30145051  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 30130873 - 30130780
Alignment:
Q  16 gctcaggatcatgggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    ||||||| || |||| |||||| |||||||||||| ||||||||| ||||| ||||||  || ||||||||||||||  ||  |||||||||||    
T  30130873 gctcaggttcttgggctgttgagtgtataaatatgcttgagtatcttcatcatttgagctagtttttgggatgagatccaaacctatttaacat 30130780  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 36236632 - 36236576
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatga 89  Q
    ||||||||||||||||||||||||| | ||||||| ||||||| | ||||||||||||    
T  36236632 tgttgaatgtataaatatgtttgagca-cctcatcatttgagttatcttttgggatga 36236576  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 50196900 - 50196977
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaacat 109  Q
    |||||| ||||||||||||||| | || ||||||||||||||  | |||||||||||||||  ||  |||||||||||    
T  50196900 tgttgagtgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatccaaacctatttaacat 50196977  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Original strand, 20995747 - 20995787
Alignment:
Q  33 gttgaatgtataaatatgtttgagtatcctcatcctttgag 73  Q
    ||||||||||||||||||||||| ||  |||||||||||||    
T  20995747 gttgaatgtataaatatgtttgactacgctcatcctttgag 20995787  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 43829672 - 43829620
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgg 84  Q
    |||||| ||||||||||||||||||||||||||| |||||||  |||||||||    
T  43829672 tgttgagtgtataaatatgtttgagtatcctcattctttgagctagcttttgg 43829620  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 30841610 - 30841581
Alignment:
Q  41 tataaatatgtttgagtatcctcatccttt 70  Q
    ||||||||||||||||||||||||||||||    
T  30841610 tataaatatgtttgagtatcctcatccttt 30841581  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 35469492 - 35469415
Alignment:
Q  31 ttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaaca 108  Q
    ||||||| ||||||||||||||||| |||  | ||||||| ||| || |||| |||||||||  |||||| |||||||    
T  35469492 ttgttgagtgtataaatatgtttgaatatttttatcctttaagttagtttttaggatgagatcaaagtctttttaaca 35469415  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 28432057 - 28431955
Alignment:
Q  6 gtctcatatcgctcaggatcatgggttgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctattta 105  Q
    |||||| || ||| ||| || |||| || ||| |||||||||||| ||||||||||||||||||| |   ||||||||| |||| ||| ||| |||||||    
T  28432057 gtctcacattgcttaggttcctgggctgctgagtgtataaatatgcttgagtatcctcatcctttaaactagcttttggaatgaaattcaagcctattta 28431958  T
Q  106 aca 108  Q
    |||    
T  28431957 aca 28431955  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 8402191 - 8402141
Alignment:
Q  39 tgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatga 89  Q
    |||||||||||||||||||| |||| |||||||||  | ||||||||||||    
T  8402191 tgtataaatatgtttgagtaccctcctcctttgagctaacttttgggatga 8402141  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 6423984 - 6424045
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatt 93  Q
    |||||| |||||||||||||||||||||| ||||| ||| ||  || |||| ||||||||||    
T  6423984 tgttgagtgtataaatatgtttgagtatcatcatcttttaagctagtttttaggatgagatt 6424045  T

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Target: scaffold0557 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 3985 - 3924
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatt 93  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| | |||||  |||||||||    
T  3985 tgttgaatgtacaaatatgtttgagtaccctcatcctttaagttaacttttaagatgagatt 3924  T

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Target: scaffold0442 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 1608 - 1547
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatt 93  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| | |||||  |||||||||    
T  1608 tgttgaatgtacaaatatgtttgagtaccctcatcctttaagttaacttttaagatgagatt 1547  T

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Target: scaffold0442; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 7723 - 7662
Alignment:
Q  32 tgttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatt 93  Q
    ||||||||||| ||||||||||||||| ||||||||||| ||| | |||||  |||||||||    
T  7723 tgttgaatgtacaaatatgtttgagtaccctcatcctttaagttaacttttaagatgagatt 7662  T

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Target: scaffold0236 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 22413 - 22465
Alignment:
Q  39 tgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgaga 91  Q
    |||||||||||| ||||||| | ||||||||||| | ||||||||||||||||    
T  22413 tgtataaatatgcttgagtaccttcatcctttgaattagcttttgggatgaga 22465  T

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Target: scaffold0549 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 1104 - 1178
Alignment:
Q  34 ttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaaca 108  Q
    |||| ||||||||||||| |||||||||  ||||||||||  || |||| |||| |||| ||| |||||||||||    
T  1104 ttgagtgtataaatatgtctgagtatccatatcctttgagctagtttttaggatcagatctaactctatttaaca 1178  T

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Target: scaffold0549; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 3194 - 3268
Alignment:
Q  34 ttgaatgtataaatatgtttgagtatcctcatcctttgagtgagcttttgggatgagatttaagtctatttaaca 108  Q
    |||| ||||||||||||| |||||||||  ||||||||||  || |||| |||| |||| ||| |||||||||||    
T  3194 ttgagtgtataaatatgtctgagtatccatatcctttgagctagtttttaggatcagatctaactctatttaaca 3268  T

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