View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_2D_low_42 (Length: 265)
Name: NF9753_2D_low_42
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 21532132 - 21531910
Alignment:
| Q |
1 |
tttgaaaaataacagttttcacatgctcccaattttaaatttccacaggccaaatgattacactaactgggatcttccaaaaatcgattttgttggctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21532132 |
tttgaaaaataacagttttcacatgctcccaattttaaatttccacaggccaaatgattacactaactgggatcttccaaaaatcgattttgttggctaa |
21532033 |
T |
|
| Q |
101 |
gtgatttcctatacttgtaaattgtaatctctcctttatctctacaattcaaaatttacataaaattattaataattttcattacactaaccttcacaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21532032 |
gtgatttcctatacttgtaaattgtaatctctcctttttctctacaattcaaaatttacataaaattattaataattttcattacactaaccttcacaca |
21531933 |
T |
|
| Q |
201 |
caatgtcaagattttctcaaata |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21531932 |
caatgtcaagattttctcaaata |
21531910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University