View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_47 (Length: 255)
Name: NF9753_2D_low_47
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10651502 - 10651266
Alignment:
| Q |
1 |
ttatgtagttaatttaattttctgacatcttgttaagtttttgaaaattactaaactacaatatacaaagatacatgagaagttgaatgattgtagttat |
100 |
Q |
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| T |
10651502 |
ttatgtagttaatttaattttctgacatcttgttaagtttttgaaaattactaaactacaatatacaaagatacatgagaagttgaatgattgtagttat |
10651403 |
T |
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| Q |
101 |
ataccagtccagttctggacgaaccattaacg-ttcggttcatttttgtctaactgttataacagtttagttcgatttccttcattaactgaaccacgaa |
199 |
Q |
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| T |
10651402 |
ataccagtccagttctggacgaaccattaatgtttcggttcatttttgtctaactgttataacagtttagttcgatttccttcattaactgaaccacgaa |
10651303 |
T |
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| Q |
200 |
cagtcctaacatcaacataccttacaaaatgttaaaa |
236 |
Q |
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| T |
10651302 |
cagtcctaacatcaacataccttacaaaatgtcaaaa |
10651266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10659386 - 10659316
Alignment:
| Q |
1 |
ttatgtagttaatttaattttctgacatcttgttaagtttttgaaaattactaaactacaatatacaaagat |
72 |
Q |
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||||||||||||||| |||| ||| ||||||||| || ||||||||||||||||| | ||||||||||||| |
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| T |
10659386 |
ttatgtagttaatttctttttttgatatcttgttatgtatttgaaaattactaaac-ataatatacaaagat |
10659316 |
T |
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