View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_50 (Length: 248)
Name: NF9753_2D_low_50
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_50 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 31 - 248
Target Start/End: Complemental strand, 46629430 - 46629213
Alignment:
| Q |
31 |
atgttacaatcaaatgataattcaatcagctactccattgtaattaccattggaatatacatatgaagttcattaacaacagagaggatgggatggcaca |
130 |
Q |
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| T |
46629430 |
atgttacaatcaaatgataattcaatcagctactccattataattaccattggaatatacatatgaagttcattaacaacagagaggatgggatggcaca |
46629331 |
T |
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| Q |
131 |
gttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttcttc |
230 |
Q |
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| T |
46629330 |
gttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttcttc |
46629231 |
T |
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| Q |
231 |
ccaatcatacattttctc |
248 |
Q |
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|||||||||||||||||| |
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| T |
46629230 |
ccaatcatacattttctc |
46629213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 46643667 - 46643798
Alignment:
| Q |
117 |
gatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccag |
216 |
Q |
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|||| |||| ||||||||||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||| || | ||| | |
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| T |
46643667 |
gatgagatgtcacagttgaatacctgtaaaaatgtatcttgagattcgtcagagacatgaggaatcaagcgagataatagttcttgttgcctcgctccgg |
46643766 |
T |
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| Q |
217 |
taaaaagtttcttcccaatcatacattttctc |
248 |
Q |
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| T |
46643767 |
caaaaagtttcttccctattatacattttctc |
46643798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 228
Target Start/End: Original strand, 46177017 - 46177128
Alignment:
| Q |
117 |
gatgggatggcacagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccag |
216 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| |||||||||||| || | ||| | ||| || ||||||| |
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| T |
46177017 |
gatgagatggcacagttgaatacctgtaacaaagtatcttgcgattcttcagagacatgagtaatcaagcgagacaaaagttcttgttgcctcggtccag |
46177116 |
T |
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| Q |
217 |
taaaaagtttct |
228 |
Q |
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||||||||||| |
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| T |
46177117 |
caaaaagtttct |
46177128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 46636657 - 46636539
Alignment:
| Q |
130 |
agttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttctt |
229 |
Q |
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|||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || ||||| | |||||| || | |
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| T |
46636657 |
agttgaatacctgtgacagagcctcttgagattcttcagagacatgaggaatcaagcgagacaatagttcatgttgcctcggtccggcaaaaaggttatg |
46636558 |
T |
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| Q |
230 |
cccaatcatacattttctc |
248 |
Q |
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| T |
46636557 |
tcctatcatacattttctc |
46636539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 46617959 - 46617841
Alignment:
| Q |
130 |
agttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttctt |
229 |
Q |
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|||||||||||||| ||| || || ||||||||||||||| |||||||||||||||||||| |||| ||||| ||| || ||||| | |||||| || | |
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| T |
46617959 |
agttgaatacctgtgacagagcattttgagattcttcagagacatgaggaatcaagcgagacaatagttcatgttgcctcggtccggcaaaaaggttatg |
46617860 |
T |
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| Q |
230 |
cccaatcatacattttctc |
248 |
Q |
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|| |||||||| |||||| |
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| T |
46617859 |
tcctatcatacactttctc |
46617841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 15770075 - 15770175
Alignment:
| Q |
128 |
acagttgaatacctgtaacaaagaatcttgagattcttcagatacatgaggaatcaagcgagataataattcatcttgtcttggtccagtaaaaagtttc |
227 |
Q |
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|||||||||||||||| ||| || |||||| ||||||||||||||||||| |||||||||||| || | ||||| ||| || |||||| ||||||||||| |
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| T |
15770075 |
acagttgaatacctgtgacagagtatcttgcgattcttcagatacatgagtaatcaagcgagacaaaagttcatgttgcctcggtccactaaaaagtttc |
15770174 |
T |
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| Q |
228 |
t |
228 |
Q |
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| T |
15770175 |
t |
15770175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 18376224 - 18376257
Alignment:
| Q |
159 |
gattcttcagatacatgaggaatcaagcgagata |
192 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
18376224 |
gattcttcggatacatgaggaatcaagcgagata |
18376257 |
T |
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