View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_54 (Length: 243)
Name: NF9753_2D_low_54
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 18446573 - 18446347
Alignment:
| Q |
8 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggctttgtgtgatatgaatatgtcaatccctatacatctt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
18446573 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggctttgtgtgatatgattctgtcaatccctatacatctt |
18446474 |
T |
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| Q |
108 |
ctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatatttat |
207 |
Q |
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| T |
18446473 |
ctcttcacttggaactctctatggtcattttaagcattaagttgaattgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatatttat |
18446374 |
T |
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| Q |
208 |
ttgtgaatggtgaaaattgatgtccat |
234 |
Q |
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| T |
18446373 |
ttgtgaatggtgaaaattgatgtccat |
18446347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 36404338 - 36404125
Alignment:
| Q |
8 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttt-gtgtgatatgaatatgtcaatccctatacatct |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||| |
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| T |
36404338 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctatgcgatgaggcttttgtgtgatatgattctgtcaatccctatacatct |
36404239 |
T |
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| Q |
107 |
tctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatattta |
206 |
Q |
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| T |
36404238 |
tctctccacttggaactccctatggtcattttaagcattaagttgaacagtatttggtaaaaaaattatattgttcaagaccggagggagtgcatattta |
36404139 |
T |
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| Q |
207 |
tttgtgaatggtga |
220 |
Q |
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|||||||||||||| |
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| T |
36404138 |
tttgtgaatggtga |
36404125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 18578863 - 18578900
Alignment:
| Q |
193 |
ggagtgcatatttatttgtgaatggtgaaaattgatgt |
230 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
18578863 |
ggagtacatatttatttgtgaatggtgaaaattgatgt |
18578900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 55353290 - 55353517
Alignment:
| Q |
8 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttt-gtgtgatatgaatatgtcaatccctatacatct |
106 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |
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| T |
55353290 |
atgaataggcagaggaagaagacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttttgtgtgatatgattctgtcaatccctatacatct |
55353389 |
T |
|
| Q |
107 |
tctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatattta |
206 |
Q |
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|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55353390 |
tctcttcatttgaaactccctatggtcattttaagcattaagttgaactgtatttggtaaaaaaattatattgttcaagaccggagggagtgcatattta |
55353489 |
T |
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| Q |
207 |
tttgtgaatggtgaaaattgatgtccat |
234 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
55353490 |
tttgtgaatggtgaaaattgatgtccat |
55353517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 29607643 - 29607414
Alignment:
| Q |
8 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggc-tttgtgtgatatgaatatgtcaatccctatacatct |
106 |
Q |
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|||||| | ||||||||||||||| |||||||||||||||||||||||| | ||||| | | ||||| |||||||| | ||||||||||||||||||| |
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| T |
29607643 |
atgaatggacagaggaagaggactgttgtaatgacgtaagttgctcaatttaagcgatacgacttttgtttgatatgattctgtcaatccctatacatct |
29607544 |
T |
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| Q |
107 |
tctcttcacttggaactctctatggtca---ttttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatat |
203 |
Q |
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||| ||||||||||||| || |||||| ||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||||| |||| |
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| T |
29607543 |
gctcatcacttggaactccctgtggtcaattttttaagca-aaagttgaactgtatttgctcaaaaatttatattattcaagacccaagggagtaaatat |
29607445 |
T |
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| Q |
204 |
ttatttgtgaatggtgaaaattgatgtccat |
234 |
Q |
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| T |
29607444 |
tattttgtgaatggtgaaaattgatgtccat |
29607414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 14906121 - 14906158
Alignment:
| Q |
193 |
ggagtgcatatttatttgtgaatggtgaaaattgatgt |
230 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
14906121 |
ggagtacatatttatttgtgaatggtgaaaattgatgt |
14906158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 13674274 - 13674233
Alignment:
| Q |
193 |
ggagtgcatatttatttgtgaatggtgaaaattgatgtccat |
234 |
Q |
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| T |
13674274 |
ggagtacatatttatttgtgaatggtgaaaattgatgtccat |
13674233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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