View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_2D_low_55 (Length: 234)
Name: NF9753_2D_low_55
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_55 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 35128276 - 35128393
Alignment:
| Q |
5 |
taatcctaaattt-agtgggacatctttactgatggttcctaattctctttacaagatcttccttgtttgaaaaggatggatttgatcaactccaagtat |
103 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35128276 |
taatcctaaattttattgggacatctttactgatggttcctaattctctttacaagatcttccttgtttgaaaaggatggatttgatcaactccaagtat |
35128375 |
T |
|
| Q |
104 |
cttatagagagtccatag |
121 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
35128376 |
cttatagagagtccatag |
35128393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 35042871 - 35042775
Alignment:
| Q |
21 |
gggacatctttactgatggttcctaattctctttacaagatcttccttgtttgaaaaggatggatttgatcaactccaagtatcttatagagagtcca |
118 |
Q |
| |
|
|||| |||||||||||||||| | ||||||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
35042871 |
gggatatctttactgatggttgc-aattctctttacaggatctcccttatttgaaaaggatggatttgagcaactccaagtatcttatagagactcca |
35042775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 35128171 - 35128111
Alignment:
| Q |
151 |
tattgtgtaatgggagttatttatccatcttgtccttcatctttttgtcttctcctcaaga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35128171 |
tattgtgtaatgggagttatttatccatcttgtccttcatctttttgtcttctcctcaaga |
35128111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 35102914 - 35102855
Alignment:
| Q |
59 |
gatcttccttgtttgaaaaggatggatttgatcaactccaagtatcttatagagagtcca |
118 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||||||| ||||| ||||| |||| |
|
|
| T |
35102914 |
gatctcccttatttgaaaaggatggatttgagcaactccaagtttcttacagagactcca |
35102855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University