View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_low_56 (Length: 231)

Name: NF9753_2D_low_56
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_low_56
NF9753_2D_low_56
[»] chr7 (19 HSPs)
chr7 (28-231)||(4828825-4829028)
chr7 (37-231)||(30405630-30405825)
chr7 (111-231)||(17881457-17881579)
chr7 (85-197)||(3268898-3269012)
chr7 (28-197)||(24596878-24597050)
chr7 (28-231)||(29544553-29544760)
chr7 (108-194)||(8308987-8309075)
chr7 (28-231)||(23124934-23125141)
chr7 (109-222)||(1074495-1074611)
chr7 (85-222)||(1255145-1255285)
chr7 (125-231)||(5312758-5312866)
chr7 (35-157)||(3487247-3487370)
chr7 (1-33)||(4828664-4828696)
chr7 (85-197)||(7142166-7142281)
chr7 (110-197)||(12358719-12358808)
chr7 (85-197)||(9761347-9761462)
chr7 (118-231)||(18496599-18496714)
chr7 (161-221)||(22067817-22067877)
chr7 (156-228)||(37144957-37145029)
[»] chr3 (17 HSPs)
chr3 (28-207)||(18474228-18474410)
chr3 (35-231)||(28422487-28422685)
chr3 (37-231)||(11474880-11475078)
chr3 (85-228)||(26297786-26297929)
chr3 (85-202)||(25919403-25919514)
chr3 (130-197)||(26387822-26387891)
chr3 (109-188)||(26797205-26797285)
chr3 (28-197)||(19219085-19219258)
chr3 (28-70)||(19542998-19543040)
chr3 (137-228)||(30493249-30493342)
chr3 (98-229)||(33577770-33577903)
chr3 (85-157)||(26418830-26418902)
chr3 (136-231)||(19545967-19546064)
chr3 (89-199)||(27415234-27415347)
chr3 (85-223)||(8402484-8402623)
chr3 (85-231)||(23908203-23908351)
chr3 (162-207)||(25188815-25188860)
[»] chr4 (21 HSPs)
chr4 (28-190)||(17187250-17187413)
chr4 (85-199)||(29437537-29437653)
chr4 (30-188)||(31859777-31859938)
chr4 (85-229)||(10576489-10576635)
chr4 (28-157)||(23353732-23353858)
chr4 (114-231)||(21167763-21167883)
chr4 (91-197)||(15192271-15192380)
chr4 (108-197)||(46647264-46647354)
chr4 (37-226)||(13064465-13064657)
chr4 (98-202)||(34864240-34864345)
chr4 (161-197)||(19601866-19601902)
chr4 (134-207)||(22119704-22119779)
chr4 (98-197)||(17026641-17026743)
chr4 (85-188)||(9288287-9288392)
chr4 (156-222)||(10320225-10320291)
chr4 (98-197)||(17339760-17339860)
chr4 (109-224)||(26159797-26159914)
chr4 (156-197)||(1673826-1673867)
chr4 (156-197)||(1676301-1676342)
chr4 (156-197)||(1682829-1682870)
chr4 (131-188)||(33519107-33519166)
[»] chr2 (21 HSPs)
chr2 (85-231)||(19541071-19541219)
chr2 (90-202)||(21849011-21849125)
chr2 (28-188)||(17415038-17415201)
chr2 (98-196)||(18236248-18236348)
chr2 (108-227)||(17240812-17240931)
chr2 (85-231)||(24047416-24047564)
chr2 (98-190)||(27417208-27417303)
chr2 (35-157)||(14921920-14922043)
chr2 (156-231)||(21843008-21843083)
chr2 (146-197)||(30705270-30705321)
chr2 (98-197)||(39730515-39730616)
chr2 (27-195)||(18818767-18818943)
chr2 (92-196)||(21505078-21505185)
chr2 (164-230)||(34063859-34063925)
chr2 (37-157)||(1732661-1732782)
chr2 (156-197)||(27917989-27918030)
chr2 (162-190)||(15829205-15829233)
chr2 (167-207)||(21844646-21844686)
chr2 (30-70)||(22525696-22525736)
chr2 (161-197)||(28278434-28278470)
chr2 (28-68)||(34063715-34063755)
[»] chr5 (13 HSPs)
chr5 (32-228)||(19331548-19331746)
chr5 (85-197)||(26070542-26070656)
chr5 (85-189)||(11274262-11274369)
chr5 (28-188)||(25367671-25367833)
chr5 (35-197)||(7742751-7742916)
chr5 (99-231)||(20694674-20694808)
chr5 (125-188)||(19763865-19763928)
chr5 (108-197)||(17027595-17027687)
chr5 (156-222)||(18222536-18222602)
chr5 (85-197)||(18178168-18178284)
chr5 (28-188)||(25594566-25594730)
chr5 (28-104)||(18872926-18873002)
chr5 (91-231)||(24841787-24841930)
[»] chr8 (18 HSPs)
chr8 (28-197)||(30543829-30544002)
chr8 (37-157)||(13583403-13583524)
chr8 (85-195)||(28074583-28074695)
chr8 (114-197)||(31436547-31436632)
chr8 (28-176)||(11437508-11437660)
chr8 (91-188)||(29291847-29291946)
chr8 (108-224)||(35135376-35135496)
chr8 (85-223)||(5153800-5153940)
chr8 (28-180)||(16052151-16052307)
chr8 (114-231)||(14424774-14424893)
chr8 (108-197)||(28260245-28260336)
chr8 (84-222)||(12956532-12956664)
chr8 (162-231)||(14977118-14977188)
chr8 (95-197)||(10867056-10867160)
chr8 (116-202)||(6888156-6888242)
chr8 (161-231)||(24584735-24584805)
chr8 (115-224)||(12774805-12774917)
chr8 (156-221)||(26882452-26882517)
[»] chr1 (20 HSPs)
chr1 (28-183)||(52271119-52271277)
chr1 (28-231)||(26854194-26854398)
chr1 (30-231)||(19257682-19257884)
chr1 (35-197)||(25727790-25727956)
chr1 (35-197)||(25736198-25736364)
chr1 (43-197)||(26102125-26102282)
chr1 (28-197)||(11769868-11770041)
chr1 (86-196)||(27461114-27461227)
chr1 (28-197)||(25494363-25494526)
chr1 (43-197)||(31313620-31313777)
chr1 (28-231)||(15298745-15298950)
chr1 (164-207)||(23223470-23223513)
chr1 (93-188)||(25730511-25730609)
chr1 (28-157)||(25126590-25126720)
chr1 (162-222)||(50047224-50047284)
chr1 (108-228)||(21548685-21548807)
chr1 (114-221)||(26657520-26657630)
chr1 (98-197)||(18795249-18795350)
chr1 (161-231)||(19884206-19884276)
chr1 (28-77)||(23505947-23505996)
[»] chr6 (10 HSPs)
chr6 (114-197)||(9943111-9943196)
chr6 (28-188)||(26499721-26499884)
chr6 (162-231)||(17860460-17860529)
chr6 (43-187)||(9396496-9396642)
chr6 (109-196)||(16439527-16439616)
chr6 (92-196)||(32930412-32930518)
chr6 (130-224)||(26512755-26512851)
chr6 (130-224)||(26517871-26517967)
chr6 (115-188)||(22559176-22559250)
chr6 (109-199)||(24617577-24617669)
[»] scaffold0185 (1 HSPs)
scaffold0185 (94-224)||(1484-1616)
[»] scaffold0188 (1 HSPs)
scaffold0188 (29-202)||(26830-27007)
[»] scaffold0171 (1 HSPs)
scaffold0171 (35-231)||(21431-21631)
[»] scaffold0065 (1 HSPs)
scaffold0065 (30-181)||(12328-12482)
[»] scaffold0011 (1 HSPs)
scaffold0011 (28-70)||(228061-228103)
[»] scaffold0386 (1 HSPs)
scaffold0386 (98-195)||(13016-13116)
[»] scaffold0190 (1 HSPs)
scaffold0190 (28-197)||(11572-11744)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 4829028 - 4828825
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcga 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  4829028 tgaattatcttcactttgtattgtcttcaaataacttctaagatcattgaattttcgtcttcttatcctcgatccgtcgtgtaatatcttgttttttcga 4828929  T
Q  128 tctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4828928 tctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggataaaagtaaattacaatgaatcgattaaaaagaatacaaaaagt 4828829  T
Q  228 tcct 231  Q
    ||||    
T  4828828 tcct 4828825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 231
Target Start/End: Complemental strand, 30405825 - 30405630
Alignment:
Q  37 ttcactttgtattgtcttcaaataacttctaaga-tcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatg 135  Q
    ||||||||||||||| |||||||| ||||||||| |||||||| ||   ||||| |||||||||||||||   |||| |||| ||||  |||| ||||||    
T  30405825 ttcactttgtattgtattcaaataccttctaagaatcattgaacttcaatcttcatatcctcgatccttcacatgatttcttattttgccgatttacatg 30405726  T
Q  136 atttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    |||||||| |||||| ||||  |||| ||||||||||||||| |||||||| ||||| |||||| |||| || | |||||| ||||||||||||||||    
T  30405725 atttctcactaaaaa-actcaaaacacctatggagttgcatggtttaggat-aaagtgaattacaatgagtcaaataaaaacaatacaaaaagttcct 30405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 231
Target Start/End: Original strand, 17881457 - 17881579
Alignment:
Q  111 atatcttgttttttcgatctacatgatttctcattaaaaagactcaacaa--ctatggagttgcatgatttaggataaaagtaaattacgatgaatcgat 208  Q
    ||||||||||||| |||| ||||||| |||||| ||||||||||||| |   ||||  |||||||||||||| ||||||| |||||||| |||| ||||     
T  17881457 atatcttgtttttccgatttacatgacttctcactaaaaagactcaaaatacctattaagttgcatgatttatgataaaattaaattacaatgattcgaa 17881556  T
Q  209 taaaaagaatacaaaaagttcct 231  Q
    | |||| ||||||||||||||||    
T  17881557 tgaaaataatacaaaaagttcct 17881579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 3268898 - 3269012
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagact--caacaactatggagttgcatgatttagg 182  Q
    ||||| ||| || |||||||| ||||||||||||||||  |||| |||||||||||||| ||||||||||   ||||  || | ||||||||||||||||    
T  3268898 tcttcatatacttgatccttcatgtgatatcttgttttgccgatttacatgatttctcactaaaaagacttaaaacacatacgaagttgcatgatttagg 3268997  T
Q  183 ataaaagtaaattac 197  Q
    |||||||| ||||||    
T  3268998 ataaaagtgaattac 3269012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 24596878 - 24597050
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||||||||  |||||| || | | |||| ||   ||||  ||||||||||| | |  ||||| |||||||||  ||    
T  24596878 tgaattttcttcactttgtattgtcttcaaatttcttctatgaaccactgaacttcaatctttatatcctcgatcttccacgtgatgtcttgttttgccg 24596977  T
Q  127 atctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    || |||| ||||||||| |||||||||| ||  || ||| |||||||||||||||||||||||| | ||||||    
T  24596978 atttacacgatttctcactaaaaagacttaaaacacctacggagttgcatgatttaggataaaattgaattac 24597050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 29544760 - 29544553
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaag-atcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||||||| | |||||||| ||||||||  ||   ||||| |||| | |||||||| |||||| ||||| ||| |||    
T  29544760 tgaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcatatctttgatccttcatgtgatgtcttggtttgtcg 29544661  T
Q  127 atctacatgatttctca-ttaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaa 223  Q
    || ||||||||| || | | ||||| ||||  ||||  |||||| |||||  |||||||| |||||| |||||| | || |||| | |||| |||||||     
T  29544660 atttacatgattccttactaaaaaacactcaaaacacttatggaattgcacaatttaggagaaaagtgaattacaacgactcgagtgaaaacaatacaat 29544561  T
Q  224 aagttcct 231  Q
    | ||||||    
T  29544560 atgttcct 29544553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 8308987 - 8309075
Alignment:
Q  108 gtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaat 194  Q
    ||||| |||||||||   ||| |||||||||||| | |||||||||||||  ||  ||||||||||||||||||||||||||| |||||    
T  8308987 gtgatgtcttgttttgctgatttacatgatttcttactaaaaagactcaaaacatgtatggagttgcatgatttaggataaaactaaat 8309075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 23125141 - 23124934
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||| ||  | ||| ||||| | |||||| ||   ||||| |||||||||||||||   |||| ||||| ||  |||    
T  23125141 tgaattttcttcactttgtattgtctttaagaatcttataagaaccattgaacttcaatcttcatatcctcgatccttcacatgatgtcttgattggtcg 23125042  T
Q  127 atctacatgatttctcatta-aaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaa 223  Q
    || |||||||||||||| || |||| ||||  |||| |||| |||||| ||||||| ||||||| || |||||| | || |||| | |||| |||||||     
T  23125041 atttacatgatttctcactagaaaacactcaaaacacctatagagttgtatgattttggataaatgtgaattacaacgactcgagtgaaaacaatacaat 23124942  T
Q  224 aagttcct 231  Q
    | ||||||    
T  23124941 atgttcct 23124934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 1074611 - 1074495
Alignment:
Q  109 tgatatcttgttttttcgatctacatgatttctcattaaaaa-gactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatc 205  Q
    |||| ||||| |||| | || |||||||||||||| |||||| ||| |||  ||  |||||||||| || |||||||||||||| ||||||| |||||||    
T  1074611 tgatgtcttgcttttccaatttacatgatttctcactaaaaaagacacaaaacacttatggagttgtataatttaggataaaagcaaattacaatgaatc 1074512  T
Q  206 gattaaaaagaatacaa 222  Q
    || | |||| |||||||    
T  1074511 gaatgaaaataatacaa 1074495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 1255145 - 1255285
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactcaa--caactatggagttgcatgatttag 181  Q
    ||||| |||||| |||||||| |||||| | ||| ||| | ||| || || |||| |||||| |||| ||||||  || ||||| |||||||||||||||    
T  1255145 tcttcgtatccttgatccttcatgtgatgttttgatttgttgatttaaataatttttcattacaaaacactcaaaacacctatgaagttgcatgatttag 1255244  T
Q  182 gataaaagtaaattacgatgaatcgattaaaaagaatacaa 222  Q
    ||||||| | |||||| |||| |||| | |||| |||||||    
T  1255245 gataaaaatgaattacaatgactcgagtgaaaacaatacaa 1255285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 5312758 - 5312866
Alignment:
Q  125 cgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaa 222  Q
    |||| |||||||||| ||| |||||||||||||  || ||||||||||||||| | || ||||||||| |||||| | || || | | |||| |||||||    
T  5312758 cgatttacatgatttatcactaaaaagactcaaaacacctatggagttgcatgctataagataaaagtgaattacaacgactcaaatgaaaacaatacaa 5312857  T
Q  223 aaagttcct 231  Q
    | |||||||    
T  5312858 atagttcct 5312866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 3487247 - 3487370
Alignment:
Q  35 tcttcactttgtattgtcttcaaataacttctaaga-tcattgaattttcg-tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctac 132  Q
    |||||||||||||||||||| ||||  ||||| ||| || |||| | |||| ||||  |||| | |||||||| | |||| |||||||||  ||||  ||    
T  3487247 tcttcactttgtattgtcttaaaatgtcttctgagagtcgttga-tgttcgatctttatatcattgatccttcatttgatgtcttgttttgccgattcac 3487345  T
Q  133 atgatttctcattaaaaagactcaa 157  Q
    |||||||||||||||||||||||||    
T  3487346 atgatttctcattaaaaagactcaa 3487370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4828664 - 4828696
Alignment:
Q  1 aaatttagaataaaagtggagaattgttgaatt 33  Q
    |||||||||||||||||||||||||||||||||    
T  4828664 aaatttagaataaaagtggagaattgttgaatt 4828696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 7142281 - 7142166
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagact--caacaactatggagttgcatgatttag 181  Q
    ||||| |||| | ||||||||  ||||| ||||| ||| ||||| |||||||||||||| || |||| |||   |||| ||||||||||||||||| | |    
T  7142281 tcttcatatctttgatccttcacgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacacttaaaacacctatggagttgcatgatcttg 7142182  T
Q  182 gataaaagtaaattac 197  Q
    ||||||||| ||||||    
T  7142181 gataaaagtgaattac 7142166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 12358719 - 12358808
Alignment:
Q  110 gatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||||| ||| |||| |||| || || |||||||| |||||||||||||  || ||||| ||||| |||||||||||||||| | ||||||    
T  12358719 gatattttgcttttccgatttatattatttctcactaaaaagactcaaaacacctatgaagttgaatgatttaggataaaaatgaattac 12358808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 9761347 - 9761462
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctca---ttaaaaagactcaacaactatggagttgcatgatttag 181  Q
    ||||| |||||| ||||||||  ||||| ||||| ||| ||||| |||||||||| |||   |||||||  |  |||| ||||||| |||||| || |||    
T  9761347 tcttcatatccttgatccttcacgtgatgtcttgatttgtcgatttacatgatttatcactattaaaaactcaaaacacctatggaattgcataatctag 9761446  T
Q  182 gataaaagtaaattac 197  Q
    ||||||||| ||||||    
T  9761447 gataaaagtgaattac 9761462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 18496714 - 18496599
Alignment:
Q  118 gttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaag 215  Q
    |||||| |||| |||||||| |||||  ||| || |||||  || ||||| ||| |||||||||||||||||| | |||||| |||| |||| | ||||     
T  18496714 gtttttccgatttacatgatatctcaccaaataggctcaaaacacctatgaagtcgcatgatttaggataaaaatgaattacaatgattcgaatgaaaac 18496615  T
Q  216 aatacaaaaagttcct 231  Q
    ||| |||| |||||||    
T  18496614 aattcaaatagttcct 18496599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 22067817 - 22067877
Alignment:
Q  161 ctatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaataca 221  Q
    ||||||||||||||||| |||||||||| | |||||| |||| |||| | |||| ||||||    
T  22067817 ctatggagttgcatgatctaggataaaattgaattacaatgactcgagtgaaaacaataca 22067877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 37145029 - 37144957
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagtt 228  Q
    |||| ||| |||||||||||||||||||||||| || ||||| | || | || | |||| |||||||||||||    
T  37145029 aacacctacggagttgcatgatttaggataaaaatatattacaacgacttgaatgaaaataatacaaaaagtt 37144957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 18474410 - 18474228
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaag-atcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||||||||| |||||||| | ||||||| ||   ||||   ||| |||||||||| ||| || |||||| ||  ||    
T  18474410 tgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaaattcaatctttacatcttcgatccttcatgtaatgtcttgtgttcccg 18474311  T
Q  127 atctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcga 207  Q
    || |||||||||||||| | |||||||||||  || |||||||||||||||||||||||||| ||| |||||| |||||||||    
T  18474310 atttacatgatttctcactgaaaagactcaaaacacctatggagttgcatgatttaggataacagtgaattacaatgaatcga 18474228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 28422685 - 28422487
Alignment:
Q  35 tcttcactttgtattgtcttcaaataacttctaagatcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacat 134  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||   ||||| ||||||| |||||||  ||||| | ||| ||| |||||||||||    
T  28422685 tcttcactttgtattgtcttcaaataccttctaacatcattgaacttcaatcttcatatcctcaatccttcacgtgatgtattgatttgtcgatctacat 28422586  T
Q  135 gatttctcatta-aaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    ||||||||| || |||| | ||  |||| | || ||||||||||||||| ||||||||| |||||| |||| |||| | |||| |||||||||| |||||    
T  28422585 gatttctcactacaaaacattcaaaacaccaattgagttgcatgattta-gataaaagtgaattacaatgattcgaatgaaaacaatacaaaaaattcct 28422487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 231
Target Start/End: Complemental strand, 11475078 - 11474880
Alignment:
Q  37 ttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatg 135  Q
    |||||||||||||||||||||||| ||||||||| | ||| |  ||   || || |||| |||||||||| |||||| |||||||||  |||| ||||||    
T  11475078 ttcactttgtattgtcttcaaatatcttctaagaaccatttatcttgaatcctcatatcttcgatccttcatgtgatgtcttgttttgccgatttacatg 11474979  T
Q  136 atttctcattaaaaa-gactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    |||||||| |||||| |||||||  ||  |||| |||||||||||||||||||||| | |||||| | || |||| | |||| ||||||||||||||||    
T  11474978 atttctcactaaaaaagactcaaaacacatatgaagttgcatgatttaggataaaattgaattacaacgagtcgaatgaaaataatacaaaaagttcct 11474880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 26297929 - 26297786
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggat 184  Q
    ||||| |||||||||||||||   |||| |||||||||  |||| |||||||||| ||| |||| ||||||||||  |||| ||||||||||||||||||    
T  26297929 tcttcatatcctcgatccttcacttgatgtcttgttttgccgatttacatgatttatcactaaatagactcaacacatatgaagttgcatgatttaggat 26297830  T
Q  185 aaaagtaaattacgatgaatcgattaaaaagaatacaaaaagtt 228  Q
    |||| | |||||| | || |||| | |||| |||| ||||||||    
T  26297829 aaaattgaattacaacgactcgaatgaaaacaatataaaaagtt 26297786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 25919403 - 25919514
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggat 184  Q
    ||||| |||||| |||||||| |||||||||||| ||| ||||| ||||||||| |||| || |||      ||| ||||||||||||||||||||||||    
T  25919403 tcttcatatccttgatccttcatgtgatatcttggtttgtcgatttacatgattcctcactacaaa------acatctatggagttgcatgatttaggat 25919496  T
Q  185 aaaagtaaattacgatga 202  Q
    |||||| |||||||||||    
T  25919497 aaaagtgaattacgatga 25919514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 26387822 - 26387891
Alignment:
Q  130 tacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||| | ||||||    
T  26387822 tacatgatttctcattaaaaagactcaaaacatctatggagttgcatgatttaggataaaacttaattac 26387891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 26797205 - 26797285
Alignment:
Q  109 tgatatcttgttttttcgatctacatgatttctcattaaaaagactc-aacaactatggagttgcatgatttaggataaaa 188  Q
    |||| ||||||||| ||||| |||||||| ||||  ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  26797205 tgatgtcttgttttgtcgatttacatgatatctctctaaaaagactcaaacacctatgaagttgcatgatttaggataaaa 26797285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 19219085 - 19219258
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| | |||||||||||||||||||||| | ||||||||| | |||||  ||   ||||| |||||| |||||||| |||||| ||||| |||   |    
T  19219085 tgaattttattcactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatccttgatccttcatgtgatgtcttggtttgaag 19219184  T
Q  127 atctacatgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    || ||||||||| |||| || |||| ||||||  ||  ||||| |||||||||||| |||||||||| ||||||    
T  19219185 atttacatgattcctcactacaaaacactcaaaacatttatggtgttgcatgattttggataaaagtgaattac 19219258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 19542998 - 19543040
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaaga 70  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  19542998 tgaattttcttcactttgtattgtcttcaaataccttctaaga 19543040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 30493249 - 30493342
Alignment:
Q  137 tttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagtt 228  Q
    ||||||| |||||||||||||  || | ||||| |||||||||||||||||||| |||| ||| | || |||| | |||| |||||||||||||    
T  30493249 tttctcactaaaaagactcaaaacacccatggatttgcatgatttaggataaaactaaactacaacgactcgaatgaaaacaatacaaaaagtt 30493342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 33577903 - 33577770
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaatt 195  Q
    |||||||| |||||| ||||  |||  |||| |||||| ||| || ||||||||||||||  || | |||  |||||||||||||||||| || | ||||    
T  33577903 gatccttcatgtgatgtcttactttgccgatttacatgttttttctttaaaaagactcaaaccaccaatgaggttgcatgatttaggatataaatgaatt 33577804  T
Q  196 acgatgaatcgattaaaaagaatacaaaaagttc 229  Q
    || ||||||| | |||||| ||||||||| ||||    
T  33577803 acaatgaatcaaataaaaacaatacaaaacgttc 33577770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 26418902 - 26418830
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa 157  Q
    ||||| |||||| |||||||| || ||| |||| ||||| |||| |||||||||||||| |||||||| ||||    
T  26418902 tcttcatatccttgatccttcatgcgatgtcttatttttccgatttacatgatttctcactaaaaagattcaa 26418830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 19545967 - 19546064
Alignment:
Q  136 atttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    ||||||||||||||| ||||  |||||||||  | || |||||| |||||||| ||| |||||| |||| || | |||||| ||||||| ||||||||    
T  19545967 atttctcattaaaaaaactcaaaacaactataaaattacatgatataggataatagtgaattacaatgactcaaataaaaacaatacaataagttcct 19546064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 27415347 - 27415234
Alignment:
Q  89 cttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggata 185  Q
    |||||||| |||||||  |||||| ||||| ||  || || |||||||||||| | || |||| ||||||  || ||||| |||||||||||||| ||||    
T  27415347 cttatccttgatcctttatgtgatgtcttgattggtctatttacatgatttcttactacaaaacactcaaaacacctatgaagttgcatgatttacgata 27415248  T
Q  186 aaagtaaattacga 199  Q
    ||||| ||||||||    
T  27415247 aaagtgaattacga 27415234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 8402484 - 8402623
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttagg 182  Q
    ||||| |||||||||||||||   |||| ||||| | | ||||| |||| |||| |||  ||||| |||||||  || |||||||||||||||||||| |    
T  8402484 tcttcatatcctcgatccttcacttgatgtcttgatctatcgatttacacgattcctcgctaaaa-gactcaaaacacctatggagttgcatgatttaag 8402582  T
Q  183 ataaaagtaaattacgatgaatcgattaaaaagaatacaaa 223  Q
    |||||| | |||||| | || |||| | |||| ||||||||    
T  8402583 ataaaaatgaattacaacgactcgaatgaaaacaatacaaa 8402623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 231
Target Start/End: Original strand, 23908203 - 23908351
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttagg 182  Q
    ||||| ||| || |||||||| || ||| ||||| |||  || | |||||||||||||  || ||||||||||  || ||||| | |||||| |||| ||    
T  23908203 tcttcatattcttgatccttcatgagatgtcttgctttgccgctttacatgatttctccctagaaagactcaaagcacctatgaaattgcattattttgg 23908302  T
Q  183 ataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    |||||||  |||||| | ||||||| | |||| ||||||||| ||||||    
T  23908303 ataaaagggaattacaacgaatcgaatgaaaacaatacaaaatgttcct 23908351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 25188860 - 25188815
Alignment:
Q  162 tatggagttgcatgatttaggataaaagtaaattacgatgaatcga 207  Q
    ||||||||||||||||||| ||||||||| |||||| |||| ||||    
T  25188860 tatggagttgcatgatttatgataaaagtgaattacaatgattcga 25188815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 17187413 - 17187250
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||| ||||||||||||||||||||||||||||||| | | |||| ||   ||||| ||||||| ||| |||   |||| | || |||| |||    
T  17187413 tgaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatcttcatatcctcaatcattcacttgatgtgttattttgtcg 17187314  T
Q  127 atctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggataaaagt 190  Q
    || |||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  17187313 atttacatgatttatcactaaaaagactcaacacctatgaagttgcatgatttaggataaaagt 17187250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 29437653 - 29437537
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttagg 182  Q
    ||||| |||||||||||||||  ||||| |||||| ||  |||| ||||||||||||||||||||||||||  |||| ||||| ||||||||||||||||    
T  29437653 tcttcatatcctcgatccttcacgtgatgtcttgtcttgccgatttacatgatttctcattaaaaagactcaaaacagctatgaagttgcatgatttagg 29437554  T
Q  183 ataaaagtaaattacga 199  Q
    |||||| | ||||||||    
T  29437553 ataaaactgaattacga 29437537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 31859777 - 31859938
Alignment:
Q  30 aattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgat 128  Q
    |||| |||||||||||||||||||||||||| ||||||||| | |||||  ||   | ||| |||||||||||||||   || | |||||||||   |||    
T  31859777 aattttcttcactttgtattgtcttcaaataccttctaagaaccattgatcttcaatattcatatcctcgatccttcacctggtgtcttgttttgctgat 31859876  T
Q  129 ctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaa 188  Q
     |||||||||||||| |||||||||||||  || ||||| ||||||||||||||||||||||    
T  31859877 ttacatgatttctcactaaaaagactcaaaacacctatgcagttgcatgatttaggataaaa 31859938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 229
Target Start/End: Complemental strand, 10576635 - 10576489
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttagg 182  Q
    ||||| |||||||||||||||   |||| |||||||||| |||| ||||| |||||||| || ||||| ||  |||| ||||| ||||| || ||||||     
T  10576635 tcttcatatcctcgatccttcacatgatgtcttgtttttccgatttacataatttctcactagaaagaatcaaaacacctatgaagttgtataatttaga 10576536  T
Q  183 ataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttc 229  Q
    |||||||| |||||| |||| |||| | |||| ||||||||| ||||    
T  10576535 ataaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttc 10576489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 23353858 - 23353732
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcga 127  Q
    |||||| |||||||||||||||||||| ||| | |||||||    |||||  |||  ||||| |||||| | |||||| |||||| |||||||||  |||    
T  23353858 tgaattttcttcactttgtattgtcttaaaagaccttctaact--attgatctttaatcttcatatccttg-tccttcatgtgatgtcttgttttgccga 23353762  T
Q  128 tctacatgatttctcattaaaaagactcaa 157  Q
    | |||||||||||||| |||||||||||||    
T  23353761 tttacatgatttctcactaaaaagactcaa 23353732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 21167883 - 21167763
Alignment:
Q  114 tcttgttttttc-gatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgatta 210  Q
    |||||||||||| ||| |||||||||||||| ||||||| |||||  || ||||| |||| |||  ||||||||||||||||||||| |  | |||| |     
T  21167883 tcttgttttttccgatttacatgatttctcactaaaaagtctcaaaacacctatgaagttacatattttaggataaaagtaaattacaacaactcgaatg 21167784  T
Q  211 aaaagaatacaaaaagttcct 231  Q
    |||| ||||||||| ||||||    
T  21167783 aaaacaatacaaaatgttcct 21167763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 15192380 - 15192271
Alignment:
Q  91 tatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactc--aacaactatggagttgcatgatttaggataaa 187  Q
    |||||| ||||||||  ||||| ||||| ||| ||||| |||||||||||||| || |||| ||||  |||| |||||||| |||| ||| |||||||||    
T  15192380 tatccttgatccttcacgtgatgtcttggtttgtcgatttacatgatttctcactacaaaacactcaaaacacctatggagctgcacgatctaggataaa 15192281  T
Q  188 agtaaattac 197  Q
    ||| ||||||    
T  15192280 agtgaattac 15192271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 46647354 - 46647264
Alignment:
Q  108 gtgatatcttgttttttcgatctacatgatttctcattaaaaaga-ctcaacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||||| |||||||||   ||| || ||||||||||  |||||| | |||||||  ||||||||||||||||||||||||||||| ||||||    
T  46647354 gtgatgtcttgttttgctgatttatatgatttctcgataaaaataactcaacacttatggagttgcatgatttaggataaaagtgaattac 46647264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 226
Target Start/End: Complemental strand, 13064657 - 13064465
Alignment:
Q  37 ttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatg 135  Q
    ||||||||| |||||||||||||| | ||||||| | |||||| ||   || ||||||||| ||||||||  ||||| ||||| |||  | || ||||||    
T  13064657 ttcactttgaattgtcttcaaataccctctaagaaccattgaacttcaatcgtcttatccttgatccttcacgtgatgtcttgatttgccaatttacatg 13064558  T
Q  136 atttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaag 226  Q
    |||||| | ||||| |||||  |||| ||||  | ||||||||||||  |||||||| | |||  |||||| || |||||| |||| ||||||    
T  13064557 atttcttactaaaatgactcaaaacacctataaaattgcatgatttataataaaagtgatttattatgaattgaataaaaacaataaaaaaag 13064465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 202
Target Start/End: Original strand, 34864240 - 34864345
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactcaacaactatggagttgcatgatttaggataaaagtaaatta 196  Q
    ||||||||  ||||| ||||| ||| ||||| |||||||||||||| || |||| |||||| |   |||||||| ||| ||||||||||||||| |||||    
T  34864240 gatccttcacgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacactcaaaacacatggagtttcataatttaggataaaagtgaatta 34864339  T
Q  197 cgatga 202  Q
    | ||||    
T  34864340 caatga 34864345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 19601902 - 19601866
Alignment:
Q  161 ctatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||||||||||||||||||||||||||||| ||||||    
T  19601902 ctatggagttgcatgatttaggataaaagtgaattac 19601866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 22119779 - 22119704
Alignment:
Q  134 tgatttctcattaaaaagactcaacaa--ctatggagttgcatgatttaggataaaagtaaattacgatgaatcga 207  Q
    |||||||||| ||||||||||||| |   ||||| ||||||||||||| || |||||||||||||| |||| ||||    
T  22119779 tgatttctcactaaaaagactcaaaatacctatgtagttgcatgattttgggtaaaagtaaattacaatgactcga 22119704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 17026641 - 17026743
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggataaaagtaaat 194  Q
    |||||||| |||||| ||||  ||| ||||| |||||||||| | | || |||| ||||||  || ||||||||||||||||| |||||||||||| |||    
T  17026641 gatccttcatgtgatgtcttaatttgtcgatttacatgatttatgactacaaaacactcaaaacacctatggagttgcatgatctaggataaaagtgaat 17026740  T
Q  195 tac 197  Q
    |||    
T  17026741 tac 17026743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 9288392 - 9288287
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaacaa--ctatggagttgcatgatttagg 182  Q
    ||||| |||||| ||||||||   |||| |||||||||  |||| |||||||||||||| |||||||||| || ||   ||||||| | ||||||||| |    
T  9288392 tcttcatatccttgatccttcacttgatgtcttgttttgccgatttacatgatttctcactaaaaagactaaaaaaacatatggaggtacatgatttatg 9288293  T
Q  183 ataaaa 188  Q
    ||||||    
T  9288292 ataaaa 9288287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 10320225 - 10320291
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaa 222  Q
    |||| ||||||||||||||| | |||||||||||| |||||| | || |||| | ||||||||||||    
T  10320225 aacacctatggagttgcatggtctaggataaaagtgaattacaacgactcgagtgaaaagaatacaa 10320291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 17339760 - 17339860
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaatt 195  Q
    |||||||| |||||||||||| ||| ||||| |||| ||| ||||| |||||||  ||||  || ||||| | |||||||||||||||||||| | ||||    
T  17339760 gatccttcatgtgatatcttgctttgtcgat-tacacgatctctcactaaaaagcttcaaaacacctatgaaattgcatgatttaggataaaattgaatt 17339858  T
Q  196 ac 197  Q
    ||    
T  17339859 ac 17339860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 26159914 - 26159797
Alignment:
Q  109 tgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcg 206  Q
    |||| |||||||||   |||||||||||||| ||| |||||||||||  ||||  |||| ||||| || |||||||| |||| |||||||| | || |||    
T  26159914 tgatgtcttgttttgctgatctacatgatttttcactaaaaagactcaaaacacatatgaagttggataatttaggacaaaactaaattacaacgactcg 26159815  T
Q  207 attaaaaagaatacaaaa 224  Q
    | | |||| |||||||||    
T  26159814 aatgaaaacaatacaaaa 26159797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 1673826 - 1673867
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||||||||||||||||||||| |||||||||| | ||||||    
T  1673826 aacaactatggagttgcatgatataggataaaattgaattac 1673867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 1676301 - 1676342
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||||||||||||||||||||| |||||||||| | ||||||    
T  1676301 aacaactatggagttgcatgatataggataaaattgaattac 1676342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 1682829 - 1682870
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||||||||||||||||||||| |||||||||| | ||||||    
T  1682829 aacaactatggagttgcatgatataggataaaattgaattac 1682870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 33519166 - 33519107
Alignment:
Q  131 acatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaa 188  Q
    ||||||||||||| |||||||||||  |||| ||| | |||||||||||||| |||||||    
T  33519166 acatgatttctcactaaaaagactcaaaacacctacgaagttgcatgatttaagataaaa 33519107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 19541219 - 19541071
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttagg 182  Q
    ||||| |||||||||||||||   |||| |||| ||||  |||| |||||||||||||| || ||||||||||  || ||||||||||||||||||||||    
T  19541219 tcttcatatcctcgatccttcacttgatgtcttattttgccgatttacatgatttctcactagaaagactcaaaacacctatggagttgcatgatttagg 19541120  T
Q  183 ataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    |||||| | |||||| |||| |||||| |||  ||||||||||||||||    
T  19541119 ataaaactgaattacaatgactcgattgaaataaatacaaaaagttcct 19541071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 21849011 - 21849125
Alignment:
Q  90 ttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaacaa--ctatggagttgcatgatttaggataaa 187  Q
    ||||||| |||||||| |||||| ||||||| || |||| ||||| |||||||| ||||||||||||| ||  |||||||||||||||||||| ||||||    
T  21849011 ttatccttgatccttcatgtgatgtcttgttcttccgatttacattatttctcactaaaaagactcaaaaatcctatggagttgcatgatttatgataaa 21849110  T
Q  188 agtaaattacgatga 202  Q
    | | |||||| ||||    
T  21849111 actgaattacaatga 21849125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 17415038 - 17415201
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||| | |||||||||||||||| |||||| | ||||| |||   ||||| | |||||||||||||  ||||| |||||||||  ||    
T  17415038 tgaattttcttcactttttgttgtcttcaaataactcctaagaaccattga-tttcaatcttcatgtcctcgatccttcacgtgatgtcttgttttgccg 17415136  T
Q  127 atctacatgatttctcattaaaaagactc--aacaactatg-gagttgcatgatttaggataaaa 188  Q
    || |||| ||||||||| |||||||||||  |||| ||||| ||||||||| ||||| |||||||    
T  17415137 atttacacgatttctcactaaaaagactcaaaacacctatgagagttgcattatttacgataaaa 17415201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 18236248 - 18236348
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaaca-ac-tatggagttgcatgatttaggataaaagtaaatt 195  Q
    |||||||| |||||| |||||||||  |||  |||||||||||||| ||||||||||||| | || ||||||||||||||||||| ||||||||| ||||    
T  18236248 gatccttcatgtgatgtcttgttttgccgagttacatgatttctcactaaaaagactcaaaatacttatggagttgcatgatttaagataaaagtgaatt 18236347  T
Q  196 a 196  Q
    |    
T  18236348 a 18236348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 17240812 - 17240931
Alignment:
Q  108 gtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcga 207  Q
    ||||| |||||||||  | || || ||||||| ||| |||||| |||||||| ||||| ||||||||||||||| |||||| |||||||||| || ||||    
T  17240812 gtgatgtcttgttttgccaatttatatgatttttcactaaaaacactcaacacctatgaagttgcatgatttagaataaaactaaattacgacgactcga 17240911  T
Q  208 ttaaaaagaatacaaaaagt 227  Q
     | |||| |||| |||||||    
T  17240912 atgaaaacaatagaaaaagt 17240931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 231
Target Start/End: Complemental strand, 24047564 - 24047416
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaacaa--ctatggagttgcatgatttagg 182  Q
    ||||| |||||| |||||||| || ||| |||||||||  |||| |  | ||||||||| ||||| ||| ||| |   |||||||||||||| |||||||    
T  24047564 tcttcatatccttgatccttcatgggatgtcttgttttgccgatttgtaggatttctcactaaaatgacccaaaatgcctatggagttgcataatttagg 24047465  T
Q  183 ataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    |||||||| |||||| |||| |||| | |||| ||||||||| ||||||    
T  24047464 ataaaagtgaattacaatgactcgaatgaaaacaatacaaaatgttcct 24047416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 27417208 - 27417303
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagact--caacaactatggagttgcatgatttaggataaaagt 190  Q
    |||||||| |||||| ||||| ||| ||||| |||||||||||||| || |||| |||   |||| ||||||||||||||||||||||||||||||    
T  27417208 gatccttcatgtgatgtcttgatttgtcgatttacatgatttctcactacaaaacacttaaaacacctatggagttgcatgatttaggataaaagt 27417303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 157
Target Start/End: Original strand, 14921920 - 14922043
Alignment:
Q  35 tcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctaca 133  Q
    ||||||||||||||||||| || ||| ||||||||| | |||||| ||   ||||| |||||||||| ||||   |||| | |||||||| |||| ||||    
T  14921920 tcttcactttgtattgtctacatataccttctaagaaccattgaacttcaatcttcatatcctcgattcttcacatgatgtattgtttttccgatttaca 14922019  T
Q  134 tgatttctcattaaaaagactcaa 157  Q
    ||||||||||  ||||||||||||    
T  14922020 tgatttctcacgaaaaagactcaa 14922043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 21843008 - 21843083
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    |||| |||| |||||||||||||||||||||||||||||||| |||| |||| | |||| ||||||| | ||||||    
T  21843008 aacacctatagagttgcatgatttaggataaaagtaaattacaatgactcgaatgaaaacaatacaacatgttcct 21843083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 30705321 - 30705270
Alignment:
Q  146 aaaaagactcaacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  30705321 aaaacgactcaacacctatgaagttgcatgatttaggataaaagtaaattac 30705270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 39730616 - 39730515
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaatt 195  Q
    |||||||| |||||| |||||||||   ||| || ||||||||||| |||||| ||||||  || ||   ||||||||||||||||||||||||| ||||    
T  39730616 gatccttcatgtgatgtcttgttttgctgatttatatgatttctcactaaaaatactcaaaacacctgcagagttgcatgatttaggataaaagtgaatt 39730517  T
Q  196 ac 197  Q
    ||    
T  39730516 ac 39730515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 18818943 - 18818767
Alignment:
Q  27 ttgaattatcttcactttgtattgtcttcaaataacttctaagatcattgaattttc-gtcttcttatcctcg-----atccttcgtgtgatatcttgtt 120  Q
    ||||||| |||||||||||||||||||||||| | ||||||||| |  | ||| ||| || ||| ||||||       |||||||  |||||  ||||||    
T  18818943 ttgaattttcttcactttgtattgtcttcaaagaccttctaagaaccattaatcttcagttttcatatcctatccttaatccttcacgtgatgccttgtt 18818844  T
Q  121 ttttcgatctacatgatttctcattaaaaagact--caacaactatggagttgcatgatttaggataaaagtaaatt 195  Q
    ||  |||| |||||||||||||| ||||||||||   |||  ||||||| |||||||||||| ||||||| ||||||    
T  18818843 ttgccgatttacatgatttctcaataaaaagactgaaaacgtctatggacttgcatgatttatgataaaactaaatt 18818767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 21505078 - 21505185
Alignment:
Q  92 atcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggataaaa 188  Q
    ||||| |||| ||| |||||| ||||  ||| ||||| ||||||||| |||| || |||| ||||||  || ||| | ||||||||||||||||||||||    
T  21505078 atccttgatctttcatgtgatgtcttaatttatcgatttacatgattcctcactacaaaacactcaaaacatctaagaagttgcatgatttaggataaaa 21505177  T
Q  189 gtaaatta 196  Q
    ||||||||    
T  21505178 gtaaatta 21505185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 34063859 - 34063925
Alignment:
Q  164 tggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcc 230  Q
    ||||||||||||||||||||||| ||| |||||| |  | |||| | |||| |||||||||||||||    
T  34063859 tggagttgcatgatttaggataatagtgaattacaacaactcgaatgaaaacaatacaaaaagttcc 34063925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 157
Target Start/End: Complemental strand, 1732782 - 1732661
Alignment:
Q  37 ttcactttgtattgtcttcaaataacttctaaga-tcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatg 135  Q
    |||| ||||||||| |||||||||  |||||||| |||||||  ||   ||||| ||| ||  ||||||| |||||| ||||||||| || || ||||||    
T  1732782 ttcattttgtattgccttcaaatatattctaagaatcattgatcttcaatcttcatattcttaatccttcatgtgatgtcttgttttgtcaatttacatg 1732683  T
Q  136 atttctcattaaaaagactcaa 157  Q
    |||||| |  ||||||||||||    
T  1732682 atttcttaccaaaaagactcaa 1732661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 27917989 - 27918030
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  27917989 aacacctatggagttgcatgatttagtataaaagtgaattac 27918030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 190
Target Start/End: Complemental strand, 15829233 - 15829205
Alignment:
Q  162 tatggagttgcatgatttaggataaaagt 190  Q
    |||||||||||||||||||||||||||||    
T  15829233 tatggagttgcatgatttaggataaaagt 15829205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 21844646 - 21844686
Alignment:
Q  167 agttgcatgatttaggataaaagtaaattacgatgaatcga 207  Q
    |||||||||||||||||||| |||||||||| |||| ||||    
T  21844646 agttgcatgatttaggataagagtaaattacaatgactcga 21844686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 22525696 - 22525736
Alignment:
Q  30 aattatcttcactttgtattgtcttcaaataacttctaaga 70  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  22525696 aattttcttcactttgtgttgtcttcaaataccttctaaga 22525736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 28278434 - 28278470
Alignment:
Q  161 ctatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  28278434 ctatggagttgcatgatctaggataaaagtgaattac 28278470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 34063715 - 34063755
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaa 68  Q
    |||||| |||||||||||||||||||||||||  |||||||    
T  34063715 tgaattttcttcactttgtattgtcttcaaatgtcttctaa 34063755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 19331746 - 19331548
Alignment:
Q  32 ttatcttcactttgtattgtcttcaaataacttctaaga-tcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgtttttt-cgatc 129  Q
    |||||||||| |||||||||||||||||  ||||||| | |||||||||||   ||||| |||||||||||||||   ||||   ||||||||  ||||     
T  19331746 ttatcttcacattgtattgtcttcaaatgtcttctaaaaatcattgaatttcaatcttcatatcctcgatccttcacttgatgctttgtttttaacgatt 19331647  T
Q  130 tacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagtt 228  Q
    ||||||||||||||  |||||||||||| |   ||||| |||||||||||||||||||| |||||||| | || |||| | || | |||||||||||||    
T  19331646 tacatgatttctcacaaaaaagactcaaaacacatggaattgcatgatttaggataaaactaaattacaacgactcgaatgaacacaatacaaaaagtt 19331548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 26070656 - 26070542
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttagg 182  Q
    ||||| |||||| |||||||| |||||| |||||||||  | || |||||||||||||| |||||||||||  ||||  ||||||||||||||||||| |    
T  26070656 tcttcatatccttgatccttcatgtgatgtcttgttttgccaatttacatgatttctcactaaaaagactcaaaacacttatggagttgcatgatttatg 26070557  T
Q  183 ataaaagtaaattac 197  Q
    |||||| | ||||||    
T  26070556 ataaaactgaattac 26070542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 11274262 - 11274369
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactcaa--caactatggagttgcatgatttag 181  Q
    ||||| |||||| |||||||| |||||| ||||| ||| ||||| |||||||||||| | || |||| ||||||  || |||||||||||||||||||||    
T  11274262 tcttcatatccttgatccttcatgtgatgtcttgatttgtcgatatacatgatttcttactacaaaacactcaaaacacctatggagttgcatgatttag 11274361  T
Q  182 gataaaag 189  Q
    ||||||||    
T  11274362 gataaaag 11274369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 25367833 - 25367671
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||| |||| |||||||||  ||||||||| | |||||| |||  ||||| |||| |||||  ||| ||||||  |||  |||| ||    
T  25367833 tgaattttcttcactttctatt-tcttcaaatgtcttctaagaaccattgaactttaatcttcgtatcatcgatatttcatgtgatgcctttcttttccg 25367735  T
Q  127 atctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaa 188  Q
    || |||||||||||||| |||||||||||  |||| ||||| |||||||||||||| |||||||    
T  25367734 atttacatgatttctcactaaaaagactcaaaacacctatgaagttgcatgatttatgataaaa 25367671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 7742751 - 7742916
Alignment:
Q  35 tcttcactttgtattgtcttcaaataacttctaag-atcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctaca 133  Q
    |||||||||||||||||||||||| | |||||||| | ||||||  ||  |||||| |||| ||||| ||||  ||||| | |||||||   ||| ||||    
T  7742751 tcttcactttgtattgtcttcaaagaccttctaagaaccattgatcttcagtcttcatatcttcgattcttcacgtgatgttttgttttactgatttaca 7742850  T
Q  134 tgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||||||||||||||||| ||||  ||||  ||||   || ||||||||||||||||||| ||||||    
T  7742851 tgatttctcattaaaaaaactcaaaacacatatgattttacatgatttaggataaaagtgaattac 7742916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 231
Target Start/End: Complemental strand, 20694808 - 20694674
Alignment:
Q  99 atccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaatta 196  Q
    ||||||| | |||| |||||||||  |||| |||||||||||| | |||||||||||  ||||  |||| ||||| || |||| |||||||| | |||||    
T  20694808 atccttcatatgatgtcttgttttgccgatttacatgatttcttactaaaaagactcaaaacacatatgcagttgaataatttgggataaaactgaatta 20694709  T
Q  197 cgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    | |||| |||| | |||| ||||||||||||||||    
T  20694708 caatgactcgaatgaaaacaatacaaaaagttcct 20694674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 19763865 - 19763928
Alignment:
Q  125 cgatctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggataaaa 188  Q
    |||| |||||||||||||| ||||||||||||| |   ||| ||||||||||||||||||||||    
T  19763865 cgatttacatgatttctcactaaaaagactcaaaacacatgaagttgcatgatttaggataaaa 19763928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 17027687 - 17027595
Alignment:
Q  108 gtgatatcttgttttttcgatctacatgatttctcatt---aaaaagactcaacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||||| ||||| ||||||||| |||||||||||||||    ||| || |  |||| |||||||||||| ||||||||||||||||| ||||||    
T  17027687 gtgatgtcttgatttttcgatttacatgatttctcatggcaaaacagtcaaaacacctatggagttgcgtgatttaggataaaagtgaattac 17027595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 18222602 - 18222536
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaa 222  Q
    |||| ||||||| |||||||||||||||||||||| |||||| |||| |||| | |||| |||||||    
T  18222602 aacacctatggatttgcatgatttaggataaaagtgaattacaatgactcgagttaaaacaatacaa 18222536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 18178284 - 18178168
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcga-tctacatgatttctcattaaaaagact--caacaactatggagttgc-atgattta 180  Q
    ||||| ||||||||||||||| || | | |||||||||||| | | |||||||||||||| ||||||||||   || | ||||| |||||| ||||||||    
T  18178284 tcttcatatcctcgatccttcatgcggtgtcttgttttttccaatttacatgatttctcactaaaaagactaaaaatacctatgaagttgcaatgattta 18178185  T
Q  181 ggataaaagtaaattac 197  Q
    |||||||| | ||||||    
T  18178184 ggataaaactgaattac 18178168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 25594566 - 25594730
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| ||||||||||| ||| ||| |||| | ||||||| ||| |||||  ||   ||||| |||||| |||| ||| |||||| ||||  |||||||    
T  25594566 tgaattttcttcactttgcattatctacaaaaaccttctaatatccattgatattcaatcttcatatccttgatcgttcatgtgatgtcttaatttttcg 25594665  T
Q  127 atctacatgatttctcatta-aaaagactc--aacaactatggagttgcatgatttaggataaaa 188  Q
    || |||||||||||||| || |||| ||||  ||||  |||| |||||||| |||||||||||||    
T  25594666 atttacatgatttctcactataaaacactcaaaacacatatgaagttgcatcatttaggataaaa 25594730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 18872926 - 18873002
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatcattgaattttcgtcttcttatcctcgatcctt 104  Q
    |||||| |||||| |||||||||||||||| || | |||||  |||||||| || | ||||| ||||||| ||||||    
T  18872926 tgaattttcttcaatttgtattgtcttcaactaccgtctaaactcattgaacttccatcttcatatcctccatcctt 18873002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 231
Target Start/End: Complemental strand, 24841930 - 24841787
Alignment:
Q  91 tatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagact--caacaactatggagttgcatgatttaggataaa 187  Q
    |||||| ||||||||  ||| | ||||| |||||| || |||||||||||||| || |||| |||   |||| |||||||||| |||||| |||||||||    
T  24841930 tatccttgatccttcacgtgttgtcttgatttttcaatttacatgatttctcactacaaaacactaaaaacacctatggagttccatgatctaggataaa 24841831  T
Q  188 agtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    ||| | |||| | || |||| | |||| ||||||| | ||||||    
T  24841830 agtgacttacaacgactcgagtgaaaacaatacaatatgttcct 24841787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 30544002 - 30543829
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaag--atcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttc 125  Q
    |||||| |||||||||| ||||||||| ||||| ||| |||   | ||||||| ||   ||||| ||||||| ||||||| ||||||||||||||||  |    
T  30544002 tgaattttcttcactttatattgtctttaaatatcttttaaagaaccattgaacttcaatcttcatatcctcaatccttcatgtgatatcttgttttacc 30543903  T
Q  126 gatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||| ||||||||||||||  ||||||||||  |||| ||||  | |||||||||||||||||||||| ||||||    
T  30543902 gatttacatgatttctcaccaaaaagactcaaaacacctatataattgcatgatttaggataaaagtgaattac 30543829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 157
Target Start/End: Original strand, 13583403 - 13583524
Alignment:
Q  37 ttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatg 135  Q
    |||||||||||||||||||||||| ||||||||| | |||||| ||   || || |||||||||||||||   |||| ||||||||| ||||| ||||||    
T  13583403 ttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcatcatatcctcgatccttcacttgatgtcttgttttgtcgatttacatg 13583502  T
Q  136 atttctcattaaaaagactcaa 157  Q
    |||||||| |||||||||||||    
T  13583503 atttctcactaaaaagactcaa 13583524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 28074695 - 28074583
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttagg 182  Q
    ||||| |||||| |||||||| | |||| |||||||||    || |||||||||||||| |||||||||||  |||| ||||||||||||||||||||||    
T  28074695 tcttcatatccttgatccttcatttgatgtcttgttttgcatatttacatgatttctcactaaaaagactcgaaacacctatggagttgcatgatttagg 28074596  T
Q  183 ataaaagtaaatt 195  Q
    |||||||| ||||    
T  28074595 ataaaagtgaatt 28074583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 31436632 - 31436547
Alignment:
Q  114 tcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||||||||| | ||| |||||||||||||| |||||||| ||||  || ||||| |||||||||||||||||||||| ||||||||    
T  31436632 tcttgttttgttgatttacatgatttctcactaaaaagattcaaaacacctatgtagttgcatgatttaggataaaactaaattac 31436547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 11437660 - 11437508
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaag-atcattgaattttcgtcttcttatcctcgatcc-ttcgtgtgatatcttgttttttc 125  Q
    ||||||||||||||| ||||||||||||||||  |||||||| | ||||||| ||   | ||| |||||| ||||| |||   |||| |||||||||  |    
T  11437660 tgaattatcttcactctgtattgtcttcaaatgtcttctaagaaccattgaacttcaattttcatatccttgatcctttcacttgatgtcttgttttgcc 11437561  T
Q  126 gatctacatgatttctcattaaaaagactcaaca-ac-tatggagttgcatga 176  Q
    ||| |||||||||||||| ||||||||||||| | || |||||||||||||||    
T  11437560 gatttacatgatttctcactaaaaagactcaaaatacatatggagttgcatga 11437508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 29291946 - 29291847
Alignment:
Q  91 tatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaaca-ac-tatggagttgcatgatttaggataaaa 188  Q
    |||||||||| ||||  |||||||||||||||  |||| |||||||||||| | ||||||||||||| | || |||  ||||||||||||||||||||||    
T  29291946 tatcctcgattcttcacgtgatatcttgttttgccgatttacatgatttcttactaaaaagactcaaaatacttataaagttgcatgatttaggataaaa 29291847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 35135376 - 35135496
Alignment:
Q  108 gtgatatcttgttttttcgatctacatgatttctc--attaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaa 203  Q
    ||||| ||||||||| ||||| ||| |||||||||  |  ||||||||||||  ||  | ||||||||||||||||||||||||| | |||||| ||||     
T  35135376 gtgatgtcttgttttgtcgatttacctgatttctccaaaaaaaaagactcaaaacacatgtggagttgcatgatttaggataaaaatgaattacaatgac 35135475  T
Q  204 tcgattaaaaagaatacaaaa 224  Q
    |||| |||||| |||||||||    
T  35135476 tcgagtaaaaacaatacaaaa 35135496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 5153940 - 5153800
Alignment:
Q  85 tcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttagg 182  Q
    ||||| |||||||||||||||   | || |||||||||  | || |||||||||||| | |||||||||||  |||| |||| |||||| |||||||| |    
T  5153940 tcttcatatcctcgatccttcactttatgtcttgttttgcctatttacatgatttcttactaaaaagactcaaaacacctatcgagttgaatgatttaag 5153841  T
Q  183 ataaaagtaaattacgatgaatcgattaaaaagaatacaaa 223  Q
    |||||| | |||||| |||| |||| | |||| ||||||||    
T  5153840 ataaaactgaattacaatgactcgaatgaaaataatacaaa 5153800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 180
Target Start/End: Original strand, 16052151 - 16052307
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaag-atcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||| ||||||||||||||||| | |||||||| |||||||   |||  ||||| ||||||  ||||||| |||||| ||||| ||| | |    
T  16052151 tgaattttcttcattttgtattgtcttcaaaaaccttctaagaatcattggtctttaatcttcatatcctttatccttcatgtgatgtcttgatttgttg 16052250  T
Q  127 atctacatgatttctcatta-aaaagactc--aacaactatggagttgcatgattta 180  Q
    || || ||||||||||| || |||| ||||  |||| |||| |||||||||||||||    
T  16052251 atttagatgatttctcactacaaaacactcaaaacacctattgagttgcatgattta 16052307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 231
Target Start/End: Original strand, 14424774 - 14424893
Alignment:
Q  114 tcttgttttttcgatctacatgatttctcattaaaaagac--tcaacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaa 211  Q
    |||||||||  |||| |||||||||||||| |||||| ||    |||| |||||||||||||||||||||||||||| | |||||| | || |||| | |    
T  14424774 tcttgttttgccgatttacatgatttctcactaaaaaaacctaaaacacctatggagttgcatgatttaggataaaactgaattacaacgactcgaatga 14424873  T
Q  212 aaagaatacaaaaagttcct 231  Q
    |||  ||| |||||||||||    
T  14424874 aaaccatataaaaagttcct 14424893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 28260245 - 28260336
Alignment:
Q  108 gtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    ||||| |||||||||   ||| |||||||||||||| |||||||||||  |||| |||||||||  ||||||||||||||||  ||||||||    
T  28260245 gtgatgtcttgttttgctgatttacatgatttctcactaaaaagactcaaaacacctatggagtctcatgatttaggataaacctaaattac 28260336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 222
Target Start/End: Complemental strand, 12956664 - 12956532
Alignment:
Q  84 gtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttagga 183  Q
    |||||| |||||| ||| |||| |||||||||||| ||| ||||| || ||||||  ||| || |||      ||| |||| ||||| ||||||||||||    
T  12956664 gtcttcatatccttgattcttcatgtgatatcttggtttatcgatttatatgattcttcactacaaa------acacctatagagttacatgatttagga 12956571  T
Q  184 taaaagtaaattacgatgaatcgattaaaaagaatacaa 222  Q
    ||||||| ||||||||||| |||| | |||| |||||||    
T  12956570 taaaagtgaattacgatgactcgagtgaaaacaatacaa 12956532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 14977118 - 14977188
Alignment:
Q  162 tatggagttgcatgatttaggataaaagtaaattacgatgaatcga-ttaaaaagaatacaaaaagttcct 231  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| | ||||| ||||||| | ||||||    
T  14977118 tatggagttgcatgatttaggataaaagtgaattacaatgactcgagtgaaaaacaatacaatatgttcct 14977188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 10867160 - 10867056
Alignment:
Q  95 ctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaa 192  Q
    |||||||||||  ||| |||||||||||  |||  |||||||||||||| |||||||| ||||  || || ||||||||||||||||  ||||||| | |    
T  10867160 ctcgatccttcacgtggtatcttgttttgccgacttacatgatttctcactaaaaagattcaaagcacctttggagttgcatgatttgagataaaactga 10867061  T
Q  193 attac 197  Q
    |||||    
T  10867060 attac 10867056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 6888156 - 6888242
Alignment:
Q  116 ttgttttttcgatctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggataaaagtaaattacgatga 202  Q
    ||||||| | ||| |||||||||||||| ||||| ||||||| |    |||||||||||||||||||||| || | |||||| ||||    
T  6888156 ttgttttgttgatttacatgatttctcactaaaatgactcaaaacacctggagttgcatgatttaggatagaactgaattacaatga 6888242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 24584735 - 24584805
Alignment:
Q  161 ctatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    |||| ||||||||||||||| ||||||| | |||||| |||| |||| | |||| |||||||||| |||||    
T  24584735 ctatagagttgcatgatttatgataaaaatgaattacaatgactcgaatgaaaacaatacaaaaaattcct 24584805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 12774805 - 12774917
Alignment:
Q  115 cttgttttttcgatctacatgatttctcattaaaaag-actcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaa 211  Q
    ||||||||| |||| ||||| |||||| | ||||||| ||| ||  || ||||||  |||||||||||||||||||| |||||||| |||| || | |||    
T  12774805 cttgtttttccgatttacattatttcttactaaaaagtactaaaaacacctatggtattgcatgatttaggataaaactaaattacaatgactcaaataa 12774904  T
Q  212 aaagaatacaaaa 224  Q
    ||| |||| ||||    
T  12774905 aaataatataaaa 12774917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 26882517 - 26882452
Alignment:
Q  156 aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaataca 221  Q
    |||| ||||||||||||||||| |||||||||| || |||| ||||| |||| | |||| ||||||    
T  26882517 aacacctatggagttgcatgatctaggataaaactatattatgatgactcgagtgaaaacaataca 26882452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 52271119 - 52271277
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaag-atcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||||||||| |||||||| | ||||||| ||   ||||| |||||||||||||||  |||   | |||||||  ||    
T  52271119 tgaattttcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatcttcatatcctcgatccttcacgtggcgttttgttttgccg 52271218  T
Q  127 atctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttagga 183  Q
    || ||||| |||||||| |||||||||||  |||| |||||||||||||| ||||||||    
T  52271219 atttacataatttctcactaaaaagactcaaaacatctatggagttgcataatttagga 52271277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 26854194 - 26854398
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||||||||| ||||||||| | |||||| ||   ||||| |||| | ||||||||   | || |||||||||  ||    
T  26854194 tgaattttcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcttcatatcattgatccttcacttaatgtcttgttttgccg 26854293  T
Q  127 atctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaa 224  Q
     | |||||||||||||  |||||||||||||  || ||||| ||||| |||| ||||||||||| | |||||| | || | || | ||||||||||||||    
T  26854294 gtttacatgatttctc--taaaaagactcaaaacatctatgaagttgtatgaattaggataaaattgaattacaacgacttgaatgaaaagaatacaaaa 26854391  T
Q  225 agttcct 231  Q
    |||||||    
T  26854392 agttcct 26854398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 19257682 - 19257884
Alignment:
Q  30 aattatcttcactttgtattgtcttcaaataacttctaagatcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatc 129  Q
    |||| |||||||||||||||||||||||| | ||||||||| | ||||  ||   ||||| ||||||||||| ||| |||||| ||||||| |  | ||     
T  19257682 aattttcttcactttgtattgtcttcaaagaccttctaagaac-ttgatgttcaatcttcatatcctcgatctttcatgtgatgtcttgttatgccaatt 19257780  T
Q  130 tacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagt 227  Q
    |||| ||||||||| |||||| ||||  |||| ||| ||| ||||||||||||||||||||   |||||| |||| | || | |||| |||||| |||||    
T  19257781 tacacgatttctcactaaaaatactcaaaacacctaaggacttgcatgatttaggataaaatcgaattacaatgactagaatgaaaacaatacagaaagt 19257880  T
Q  228 tcct 231  Q
    ||||    
T  19257881 tcct 19257884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 25727790 - 25727956
Alignment:
Q  35 tcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctaca 133  Q
    ||||||||||| |||||||||||| | |||| |||| | |||||  ||   ||||| ||||||  ||||||| |||||||| ||| ||| ||||| ||||    
T  25727790 tcttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcatatccttaatccttcatgtgatatattgatttgtcgatttaca 25727889  T
Q  134 tgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||||||||| || |||| ||||||  || |||| ||||||||||||||||||||||||| ||||||    
T  25727890 tgatttctcactacaaaacactcaaaacacctattgagttgcatgatttaggataaaagtgaattac 25727956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 25736198 - 25736364
Alignment:
Q  35 tcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctaca 133  Q
    ||||||||||| |||||||||||| | |||| |||| | |||||  ||   ||||| ||||||  ||||||| |||||||| ||| ||| ||||| ||||    
T  25736198 tcttcactttggattgtcttcaaaaaccttccaagaaccattgatcttcaatcttcatatccttaatccttcatgtgatatattgatttgtcgatttaca 25736297  T
Q  134 tgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||||||||| || |||| ||||||  || |||| ||||||||||||||||||||||||| ||||||    
T  25736298 tgatttctcactacaaaacactcaaaacacctattgagttgcatgatttaggataaaagtgaattac 25736364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 26102282 - 26102125
Alignment:
Q  43 ttgtattgtcttcaaataacttctaaga-tcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttct 141  Q
    |||||||||||||||| | ||||||| | |||||||  ||   ||||| |||||| |||| |||  ||||| ||||||||| ||||| | || ||| |||    
T  26102282 ttgtattgtcttcaaaaaccttctaaaaatcattgatcttcattcttcatatccttgatcattcacgtgatgtcttgttttgtcgatttgcacgatatct 26102183  T
Q  142 cattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    || |||||||||||||  || | |||||||||||||||||||||||||||| ||||||    
T  26102182 cactaaaaagactcaaaacacccatggagttgcatgatttaggataaaagtgaattac 26102125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 11769868 - 11770041
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaag-atcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||||||| | |||||||| | |||||   ||   ||||| |||| | |||| ||| |||||| ||||| |||||||    
T  11769868 tgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcatatctttgatcattcatgtgatgtcttgatttttcg 11769967  T
Q  127 atctacatgatttctca-ttaaaaagactca--acaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    || |||||||||||||| |  |||| |||||  ||| | ||| |||| ||||||||||||||||||| ||||||    
T  11769968 atttacatgatttctcactgcaaaacactcaacacacccatgaagtttcatgatttaggataaaagtgaattac 11770041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 27461114 - 27461227
Alignment:
Q  86 cttcttatcctcgatccttcgtgtgatatcttgttttttc-gatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttagg 182  Q
    |||| ||||||||||| ||| |||||| |||||||||||| ||  |||||||||||| | ||||||||||   |||| ||||| |||||||| |||||||    
T  27461114 cttcatatcctcgatctttcatgtgatgtcttgttttttccgacttacatgatttcttactaaaaagactacaaacacctatgaagttgcataatttagg 27461213  T
Q  183 ataaaagtaaatta 196  Q
    |||||||| |||||    
T  27461214 ataaaagtgaatta 27461227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 25494363 - 25494526
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||||||| | ||||||||| | ||||   ||   ||||| |||| | | |||||  |||||| ||||| ||| |||    
T  25494363 tgaattttcttcactttgtattgtcttcaaaaaccttctaagaaccattggtcttcaatcttcatatctt-gctccttaatgtgatgtcttgatttgtcg 25494461  T
Q  127 atctacatgatttctcattaaaaagactcaacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    || |||||||||||||| || |||      ||| ||||| |||||||||||||||||||||||||||||||    
T  25494462 atttacatgatttctcactacaaa------acacctatgtagttgcatgatttaggataaaagtaaattac 25494526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 197
Target Start/End: Complemental strand, 31313777 - 31313620
Alignment:
Q  43 ttgtattgtcttcaaataacttctaaga-tcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttct 141  Q
    |||||||||||||||| | ||| ||||| |||||||  ||   ||||| ||| ||  |||||||  ||||| | |||||||| | || ||||||||||||    
T  31313777 ttgtattgtcttcaaaaaccttataagaatcattgatcttcattcttcatattcttaatccttcacgtgatgtattgtttttccaatttacatgatttct 31313678  T
Q  142 cattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
     | |||||| ||||||  || ||||| |||||||||||||||||||||||| ||||||    
T  31313677 tactaaaaaaactcaaaacacctatgaagttgcatgatttaggataaaagtgaattac 31313620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 15298745 - 15298950
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| | ||||| |||||||| ||||||||||||| ||||| | |||||  ||   ||||| ||||||||||||||    |||| |||||||||  ||    
T  15298745 tgaattttattcacattgtattg-cttcaaataacttttaagaaccattgatcttgaatcttcatatcctcgatcctttacatgatttcttgttttgccg 15298843  T
Q  127 atctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaa 224  Q
    || |||||||||| ||| |||| |||| |||  || ||||| ||||||||||||| |||||||| | |||||| |||| || | | || | |||||||||    
T  15298844 atttacatgatttatcactaaatagacacaaaacacctatgaagttgcatgattttggataaaacttaattacaatgattcaaatgaatacaatacaaaa 15298943  T
Q  225 agttcct 231  Q
    | |||||    
T  15298944 acttcct 15298950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 23223513 - 23223470
Alignment:
Q  164 tggagttgcatgatttaggataaaagtaaattacgatgaatcga 207  Q
    |||||||||||||||||||||||||||||||||| | |||||||    
T  23223513 tggagttgcatgatttaggataaaagtaaattacaacgaatcga 23223470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 25730511 - 25730609
Alignment:
Q  93 tcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactc--aacaactatggagttgcatgatttaggataaaa 188  Q
    |||| |||||||| |||||||||||| ||| ||||| |||||||||||||  || |||| ||||  |||| || || ||||||||||||||||||||||    
T  25730511 tccttgatccttcatgtgatatcttgatttgtcgatttacatgatttctcgctacaaaacactcaaaacacctgtgaagttgcatgatttaggataaaa 25730609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 157
Target Start/End: Complemental strand, 25126720 - 25126590
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||| |||||||||| |||||| |  |||||||| | |||||  | | ||| || ||||||| |||||||  ||||| |||| |||||       
T  25126720 tgaattttcttcattttgtattgtattcaaagattttctaagaactattgatctgtagtcgtcatatcctcaatccttcacgtgatgtcttatttttcta 25126621  T
Q  127 atctacatgatttctcattaaaaagactcaa 157  Q
    || ||||||||||||||||||||||||||||    
T  25126620 atttacatgatttctcattaaaaagactcaa 25126590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 50047284 - 50047224
Alignment:
Q  162 tatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaa 222  Q
    |||||||||| |||||||||||||||||| |||||| |||| |||| | |||| |||||||    
T  50047284 tatggagttgtatgatttaggataaaagtgaattaccatgactcgagtgaaaacaatacaa 50047224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 21548807 - 21548685
Alignment:
Q  108 gtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatc 205  Q
    ||||| |||||||||| |||| ||| ||||||| || || ||||||||  ||||  |||||||||||||  |||||||||||| | |||||| | || ||    
T  21548807 gtgatgtcttgtttttccgatttacttgatttcacactagaaagactccaaacacttatggagttgcattttttaggataaaactgaattacaacgactc 21548708  T
Q  206 gattaaaaagaatacaaaaagtt 228  Q
    || | |||| |||| ||||||||    
T  21548707 gaatgaaaacaatataaaaagtt 21548685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 26657630 - 26657520
Alignment:
Q  114 tcttgttttttcgatctacatgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgatta 210  Q
    ||||| ||| ||||| |||||||||| ||| || |||| ||||||  || |||||||||||| |||| |||||||||||| |||||| | ||||||| |     
T  26657630 tcttgatttgtcgatttacatgatttttcactacaaaacactcaaaacacctatggagttgcgtgatctaggataaaagtgaattacaacgaatcgagtg 26657531  T
Q  211 aaaagaataca 221  Q
    |||| ||||||    
T  26657530 aaaacaataca 26657520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 18795350 - 18795249
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaatt 195  Q
    ||||| || |||||| |||||||||   ||| |||| ||||||||| ||||| |||||||  || ||||| || || |||| ||||||||||||||||||    
T  18795350 gatccatcatgtgatgtcttgttttgctgatttacacgatttctcactaaaatgactcaaaacacctatgaagctgtatgacttaggataaaagtaaatt 18795251  T
Q  196 ac 197  Q
    ||    
T  18795250 ac 18795249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 19884276 - 19884206
Alignment:
Q  161 ctatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    |||||||||||||||||||||||||||||  ||||||   ||||||| | |||| |||| |||| ||||||    
T  19884276 ctatggagttgcatgatttaggataaaagagaattacatcgaatcgaatgaaaacaatataaaaggttcct 19884206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 23505996 - 23505947
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatcattga 77  Q
    |||||| |||||||||||||||||||||||||  |||| |||| ||||||    
T  23505996 tgaattttcttcactttgtattgtcttcaaatgtcttccaagaccattga 23505947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 9943111 - 9943196
Alignment:
Q  114 tcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattac 197  Q
    |||||||||| |||| |||||||||||||| |||||| ||| ||  || |||||||||||||||||||||||||||||| ||||||    
T  9943111 tcttgtttttccgatttacatgatttctcaataaaaatactaaaaacacctatggagttgcatgatttaggataaaagtgaattac 9943196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 26499721 - 26499884
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||| ||||||||||||||||||| | ||||||||| | |||||  ||   ||||| ||||||||||| |||  ||| |||||||||||  ||    
T  26499721 tgaattttctttactttgtattgtcttcaaaaaccttctaagaaccattgatcttcaatcttcatatcctcgatctttcacgtggtatcttgttttgccg 26499820  T
Q  127 atctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaa 188  Q
    || | |||||||||||| |||||| ||||  |||| ||||| | || |||||||||||||||||    
T  26499821 atttgcatgatttctcactaaaaacactcataacacctatgaaattacatgatttaggataaaa 26499884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 17860460 - 17860529
Alignment:
Q  162 tatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcct 231  Q
    ||||||||||||||||||| ||||||||||||| || |||| |||| | |||| ||||||||| ||||||    
T  17860460 tatggagttgcatgatttaagataaaagtaaatgacaatgactcgagtgaaaataatacaaaatgttcct 17860529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 9396496 - 9396642
Alignment:
Q  43 ttgtattgtcttcaaataacttctaaga-tcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttct 141  Q
    |||||||||||||||| || |||||||| || ||||  ||   ||||||| |||| ||||||||  ||||| |||||||||  |||| || |||||||||    
T  9396496 ttgtattgtcttcaaaaaatttctaagaatcgttgatcttcattcttcttgtccttgatccttcacgtgatgtcttgttttgccgattta-atgatttct 9396594  T
Q  142 cattaaaaagactc--aacaactatggagttgcatgatttaggataaa 187  Q
    || |||||||||||  ||||  |||| ||||||||||||||| |||||    
T  9396595 cactaaaaagactcaaaacacatatgaagttgcatgatttagaataaa 9396642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 16439616 - 16439527
Alignment:
Q  109 tgatatcttgttttttcgatctacatgatttctcattaaaaagactcaa--caactatggagttgcatgatttaggataaaagtaaatta 196  Q
    |||| ||||||||||  ||| |||||||||||||| |||||||||||||  ||  | || |||||||| ||||||||||||||| |||||    
T  16439616 tgatgtcttgtttttctgatttacatgatttctcactaaaaagactcaaaacacatgtgaagttgcattatttaggataaaagttaatta 16439527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 32930412 - 32930518
Alignment:
Q  92 atcctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaag 189  Q
    ||||| |||||| | |||||| |||||||||  | || |||||||||||||| |||||||||||  |||| ||||  | ||||||| || ||||||||||    
T  32930412 atccttgatcctccatgtgatgtcttgttttgccaatttacatgatttctcactaaaaagactcaaaacatctatcaaattgcatgtttaaggataaaag 32930511  T
Q  190 taaatta 196  Q
    | |||||    
T  32930512 tgaatta 32930518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 26512755 - 26512851
Alignment:
Q  130 tacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaa 224  Q
    |||||||||||||| ||  |||||||  |||| |||| | |||||||||| |||| ||||||| |||||| | ||||||| | |||| |||||||||    
T  26512755 tacatgatttctcactaggaagactcaaaacagctatcgggttgcatgatctaggttaaaagtgaattacaacgaatcgaatgaaaacaatacaaaa 26512851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 26517871 - 26517967
Alignment:
Q  130 tacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaa 224  Q
    |||||||||||||| ||  |||||||  |||| |||| | |||||||||| |||| ||||||| |||||| | ||||||| | |||| |||||||||    
T  26517871 tacatgatttctcactaggaagactcaaaacagctatcgggttgcatgatctaggttaaaagtgaattacaacgaatcgaatgaaaacaatacaaaa 26517967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 22559176 - 22559250
Alignment:
Q  115 cttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaa 188  Q
    |||||||||||||| |||||||||||||| | ||||||| |  |||| ||||| ||||||||||||| ||| ||||    
T  22559176 cttgttttttcgatttacatgatttctcact-aaaagacccaaaacacctatgaagttgcatgatttgggaaaaaa 22559250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 24617669 - 24617577
Alignment:
Q  109 tgatatcttgttttttcgatctacatgatttctcattaaaaagactcaaca-act-atggagttgcatgatttaggataaaagtaaattacga 199  Q
    |||| |||||||||   ||| ||||| |||||||| ||||||||||||| | ||| ||| |||| ||||||||||||||||| | ||||||||    
T  24617669 tgatgtcttgttttgctgatttacataatttctcactaaaaagactcaaaacactcatgaagttacatgatttaggataaaactgaattacga 24617577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 94 - 224
Target Start/End: Complemental strand, 1616 - 1484
Alignment:
Q  94 cctcgatccttcgtgtgatatcttgttttttcgatctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagta 191  Q
    |||||||| ||| |||||| || ||||||| |||| |||||||||| |||| ||||||||||  |||| || | ||||||||||||| | |||||||||     
T  1616 cctcgatctttcatgtgatttcatgtttttccgatttacatgatttttcataaaaaagactcgaaacatcttttgagttgcatgattaatgataaaagtg 1517  T
Q  192 aattacgatgaatcgattaaaaagaatacaaaa 224  Q
    |||||  ||||||||| | |||| |||||||||    
T  1516 aattaaaatgaatcgaatgaaaacaatacaaaa 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 202
Target Start/End: Original strand, 26830 - 27007
Alignment:
Q  29 gaattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcga 127  Q
    ||||| |||||||||||||||||||||||  |  |||||||| | |||||| ||   | ||| |||||| |||| |||  ||||| ||||  ||| ||||    
T  26830 gaattttcttcactttgtattgtcttcaagaactttctaagaaccattgaacttcaattttcatatccttgatctttcacgtgatgtcttaatttgtcga 26929  T
Q  128 tctacatgatttctcatta-aaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattacgatga 202  Q
    | |||||||||||||| ||  ||| ||||  |||| ||||| ||||| ||||||||||||||||||||||||| ||||    
T  26930 tttacatgatttctcactactaaacactcaaaacacctatgtagttgtatgatttaggataaaagtaaattacaatga 27007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 21631 - 21431
Alignment:
Q  35 tcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcgatctaca 133  Q
    |||| ||||||||||||||| ||| | ||||||||| | |||||  ||   ||||| |||| | |||||||| ||| || ||||| ||| ||||| ||||    
T  21631 tcttaactttgtattgtctttaaaaaccttctaagaaccattgatcttcaatcttcatatcattgatccttcatgtaatgtcttggtttgtcgatttaca 21532  T
Q  134 tgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggataaaagtaaattacgatgaatcgattaaaaagaatacaaaaagttcc 230  Q
    ||||| |||| |  |||| || |||  ||| |||| |||||||||||||||||||||||| |||||| | || |||| | |||| ||||||| |||||||    
T  21531 tgattcctcactgcaaaacacccaaaacaattatgaagttgcatgatttaggataaaagtgaattacaacgactcgagtgaaaacaatacaataagttcc 21432  T
Q  231 t 231  Q
    |    
T  21431 t 21431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 12482 - 12328
Alignment:
Q  30 aattatcttcactttgtattgtcttcaaataacttctaagatc-attgaattttcg-tcttcttatcctcgatccttcgtgtgatatcttgttttttcga 127  Q
    |||| ||||||||||||||| |||||| | ||||||||| | | ||||  | |||| ||||| |||| || |||||||  ||||| ||||| ||| ||||    
T  12482 aattttcttcactttgtattttcttcataaaacttctaacaaccattg--tcttcgatcttcatatcgtcaatccttcacgtgatgtcttgatttgtcga 12385  T
Q  128 tctacatgatttctcatta-aaaagactc--aacaactatggagttgcatgatttag 181  Q
    | |||||||||||||| || |||| ||||  |||| |||||||||||||||||||||    
T  12384 tttacatgatttctcactacaaaacactcaaaacacctatggagttgcatgatttag 12328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 228061 - 228103
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaaga 70  Q
    |||||| |||||||||||||||||||||||||| |||||||||    
T  228061 tgaattttcttcactttgtattgtcttcaaataccttctaaga 228103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 13016 - 13116
Alignment:
Q  98 gatccttcgtgtgatatcttgttttttcgatctacatgatttctcatta-aaaagactcaa--caactatggagttgcatgatttaggataaaagtaaat 194  Q
    |||||||| |||||| ||||| ||| ||||| ||||||||| |||| || |||| ||||||  || || ||||||||||| ||||||||||||||| |||    
T  13016 gatccttcatgtgatgtcttgatttgtcgatttacatgattcctcactacaaaacactcaaaacacctgtggagttgcataatttaggataaaagtgaat 13115  T
Q  195 t 195  Q
    |    
T  13116 t 13116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 11572 - 11744
Alignment:
Q  28 tgaattatcttcactttgtattgtcttcaaataacttctaag-atcattgaattttcgtcttcttatcctcgatccttcgtgtgatatcttgttttttcg 126  Q
    |||||| |||||||||||||||||||||||||| ||| |||| ||||||||  ||   |||||  || ||| ||||||    |||| ||||||||| |||    
T  11572 tgaattttcttcactttgtattgtcttcaaataccttataagaatcattgatattcaatcttcaaattctcaatccttaacttgatgtcttgttttgtcg 11671  T
Q  127 atctacatgatttctcattaaaaagactc--aacaactatggagttgcatgatttaggataaaagtaaattac 197  Q
    || |||||||||||  |   |||||||||  |||| | ||| ||||||||||||||||| |||| | ||||||    
T  11672 atttacatgatttcgtacggaaaagactcaaaacacccatgtagttgcatgatttaggacaaaactgaattac 11744  T

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