View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_60 (Length: 226)
Name: NF9753_2D_low_60
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 54246177 - 54245970
Alignment:
| Q |
1 |
tcttagcctattggtttcgctttctccttcgactaggaatcctttgctaacactgccacgctactgaaaaagaattgttttacacaacgatggcgttccc |
100 |
Q |
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| T |
54246177 |
tcttagcctattggtttcgctttctccttcgactaggaatcctttgcta----tgccacgctaccgaaaaagaattgttttacacaaatatggcgttccc |
54246082 |
T |
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| Q |
101 |
aaatgggaaatgggttacgataggttcttcaaaacccttcatggaggcggtgccaaatttatgcacgagacataaatatggaggtaaatgagaaatgaaa |
200 |
Q |
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| T |
54246081 |
aaatgggaaatgggttacgataggttcttcaaaacccttcatggaggcggtgccaaatttatgcacgagacataaatatggaggtaaatgagaaatgaaa |
54245982 |
T |
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| Q |
201 |
tgaggatcttga |
212 |
Q |
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| T |
54245981 |
tgaggatcttga |
54245970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 32187029 - 32186970
Alignment:
| Q |
144 |
gaggcggtgccaaatttatgcacgagacataaatatggaggtaaatgagaaatgaaatga |
203 |
Q |
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|||| ||||||||||||||||| |||||||| ||| | | ||| |||||||||||||||| |
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| T |
32187029 |
gaggtggtgccaaatttatgcatgagacatatataagcaagtatatgagaaatgaaatga |
32186970 |
T |
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