View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_low_61 (Length: 224)

Name: NF9753_2D_low_61
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_low_61
NF9753_2D_low_61
[»] chr8 (8 HSPs)
chr8 (5-172)||(28902449-28902616)
chr8 (175-224)||(28903986-28904035)
chr8 (81-155)||(16051933-16052007)
chr8 (156-216)||(19705023-19705083)
chr8 (80-151)||(15213390-15213461)
chr8 (111-146)||(29046944-29046979)
chr8 (156-217)||(14271877-14271938)
chr8 (156-216)||(17510941-17511001)
[»] chr2 (9 HSPs)
chr2 (3-220)||(32137759-32137976)
chr2 (33-220)||(32130576-32130763)
chr2 (3-220)||(32139181-32139398)
chr2 (1-146)||(30999107-30999252)
chr2 (138-220)||(32141373-32141455)
chr2 (77-144)||(15454145-15454212)
chr2 (79-145)||(19949153-19949219)
chr2 (154-220)||(16157082-16157148)
chr2 (79-145)||(35708185-35708250)
[»] chr4 (9 HSPs)
chr4 (89-146)||(51885044-51885101)
chr4 (79-146)||(27303130-27303197)
chr4 (156-217)||(9849707-9849768)
chr4 (88-139)||(18898421-18898472)
chr4 (79-146)||(25314882-25314949)
chr4 (118-151)||(5676679-5676712)
chr4 (156-217)||(25025142-25025203)
chr4 (156-216)||(15166505-15166565)
chr4 (80-144)||(15192637-15192701)
[»] scaffold0362 (1 HSPs)
scaffold0362 (71-151)||(8053-8132)
[»] chr5 (7 HSPs)
chr5 (79-146)||(22230153-22230220)
chr5 (78-155)||(22755367-22755444)
chr5 (156-216)||(23338928-23338988)
chr5 (83-139)||(24842113-24842169)
chr5 (88-139)||(26329702-26329753)
chr5 (115-144)||(17028707-17028736)
chr5 (155-216)||(23387546-23387607)
[»] chr3 (11 HSPs)
chr3 (80-150)||(19218832-19218902)
chr3 (156-217)||(52935533-52935594)
chr3 (79-146)||(11521585-11521652)
chr3 (156-220)||(7805775-7805839)
chr3 (156-218)||(819846-819908)
chr3 (81-142)||(19263533-19263594)
chr3 (155-220)||(20886901-20886966)
chr3 (155-216)||(19912617-19912678)
chr3 (156-216)||(12517327-12517387)
chr3 (80-144)||(21828846-21828910)
chr3 (153-217)||(22470399-22470463)
[»] chr1 (11 HSPs)
chr1 (71-144)||(23521346-23521419)
chr1 (154-224)||(21663088-21663159)
chr1 (71-151)||(23519369-23519449)
chr1 (119-155)||(25726297-25726333)
chr1 (119-155)||(25734705-25734741)
chr1 (80-144)||(27460522-27460586)
chr1 (121-155)||(18300674-18300708)
chr1 (79-145)||(21451624-21451690)
chr1 (156-216)||(729173-729233)
chr1 (156-216)||(12210302-12210362)
chr1 (156-216)||(21450804-21450864)
[»] chr6 (5 HSPs)
chr6 (156-215)||(24480062-24480121)
chr6 (157-215)||(24469836-24469894)
chr6 (91-151)||(13723853-13723912)
chr6 (156-217)||(22564549-22564610)
chr6 (80-144)||(22262785-22262849)
[»] chr7 (9 HSPs)
chr7 (89-143)||(3400239-3400293)
chr7 (79-135)||(315533-315589)
chr7 (80-143)||(20446618-20446681)
chr7 (148-214)||(3173749-3173815)
chr7 (79-141)||(7493689-7493751)
chr7 (118-151)||(7777726-7777759)
chr7 (118-155)||(20470405-20470442)
chr7 (155-216)||(26249074-26249135)
chr7 (176-216)||(3585542-3585582)
[»] scaffold0043 (1 HSPs)
scaffold0043 (156-217)||(88436-88497)
[»] scaffold0103 (1 HSPs)
scaffold0103 (81-137)||(37225-37281)
[»] scaffold0016 (1 HSPs)
scaffold0016 (155-216)||(4861-4922)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 28902449 - 28902616
Alignment:
Q  5 tgggacaacattggttgctgcctcaggcgcccttgcgtgtaactctaggcgcccagatgcaggcataaagtggattttgcttattttccaagctggatca 104  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||| |||||||    
T  28902449 tgggacaacattggttgcttcctcaagcgcccttgcgtgtaactctaggcgcccaaatgcgggcataaaatggattttgcttgttttccaagttggatca 28902548  T
Q  105 gtgcataaagcctagttttcttctcttaaaccctaagtaaccatatgttattgatgataggtcatctt 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28902549 gtgcataaagcctagttttcttctcttaaaccctaagtaaccatatgttattgatgataggtcatctt 28902616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 28903986 - 28904035
Alignment:
Q  175 gttattcttagtatgttcatcaatcattttcagtaggttttacatcaaaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28903986 gttattcttagtatgttcatcaatcattttcagtaggttttacatcaaaa 28904035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 16052007 - 16051933
Alignment:
Q  81 ttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaaccatatgttat 155  Q
    |||||| |||| ||||||||||| ||| | ||| | |||||||||||||||||||||||  ||| ||||||||||    
T  16052007 ttgcttgtttttcaagctggatcggtggaaaaaacttagttttcttctcttaaaccctatttaatcatatgttat 16051933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 19705083 - 19705023
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||| | ||||||||  |||||||||||||||||  ||| |||||||||||||||||||    
T  19705083 tgatgacatgtcatcttacgttattcttagtatgtttttcagtcattttcagtaggtttta 19705023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 15213461 - 15213390
Alignment:
Q  80 tttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaaccatatg 151  Q
    ||||||| ||||||||||| |||  ||||| |||||  |||||||||||||| |||| ||||||| ||||||    
T  15213461 tttgcttgttttccaagcttgattggtgcaaaaagctcagttttcttctcttcaaccataagtaatcatatg 15213390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 29046979 - 29046944
Alignment:
Q  111 aaagcctagttttcttctcttaaaccctaagtaacc 146  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29046979 aaagcctagttttcttctcttaacccctaagtaacc 29046944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 14271938 - 14271877
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttac 217  Q
    |||||| ||||||||||  ||||||||||| |||||  |||| | |||||||||||||||||    
T  14271938 tgatgacaggtcatcttacgttattcttagcatgtttttcaacctttttcagtaggttttac 14271877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 17511001 - 17510941
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||||||||||||||   |||||||||| |||||  ||| ||| |||||||||||||||    
T  17511001 tgatgataggtcatcttacattattcttagcatgtttttcagtcactttcagtaggtttta 17510941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 32137759 - 32137976
Alignment:
Q  3 cctgggacaacattggttgctgcctcaggcgcccttgcgtgtaactctaggcgcccagatgcaggcataaagtggattttgcttattttccaagctggat 102  Q
    ||||||||||||| ||||||| || ||||||||| ||| ||||||||   ||||||| |||| |||||||||||| | |||||| |||||||||||||||    
T  32137759 cctgggacaacatcggttgcttccccaggcgcccctgcttgtaactccttgcgcccatatgcgggcataaagtggttattgcttgttttccaagctggat 32137858  T
Q  103 cagtgcataaagcctagttttcttctcttaaaccctaagtaaccatatgttattgatgataggtcatcttgagttattcttagtatgttcatcaatcatt 202  Q
      ||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||| |||||| |||| |||||    
T  32137859 ttgtgcaaaaagcctagttttgttctcttaatccctaagtaaccatatgttattgatgacaggtcatcttacgttattcttattatgtttatcagtcatt 32137958  T
Q  203 ttcagtaggttttacatc 220  Q
    || |||||||||||||||    
T  32137959 tttagtaggttttacatc 32137976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 33 - 220
Target Start/End: Original strand, 32130576 - 32130763
Alignment:
Q  33 gcccttgcgtgtaactctaggcgcccagatgcaggcataaagtggattttgcttattttccaagctggatcagtgcataaagcctagttttcttctctta 132  Q
    |||| |||||||||||| | ||||||| |||| |||||||||||| ||| |||| |||||||||||||||  ||||| ||||||||||||||||||||||    
T  32130576 gcccctgcgtgtaactccatgcgcccatatgcgggcataaagtggttttcgcttcttttccaagctggatttgtgcaaaaagcctagttttcttctctta 32130675  T
Q  133 aaccctaagtaaccatatgttattgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttacatc 220  Q
    ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||| |||| ||||||| |||| ||||||||||    
T  32130676 aaccctaagtaaccatatgttattgatgacaggtcatcttacgttattcttagtatgtttatcagtcatttttagtaagttttacatc 32130763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 32139181 - 32139398
Alignment:
Q  3 cctgggacaacattggttgctgcctcaggcgcccttgcgtgtaactctaggcgcccagatgcaggcataaagtggattttgcttattttccaagctggat 102  Q
    ||||||||| ||| ||||  | |||||||||| | ||||||||| || | ||||| | ||||  |||||||||||||||||||| |||||||||||||||    
T  32139181 cctgggacatcatcggttctttcctcaggcgctcctgcgtgtaattccatgcgcctatatgcgtgcataaagtggattttgcttgttttccaagctggat 32139280  T
Q  103 cagtgcataaagcctagttttcttctcttaaaccctaagtaaccatatgttattgatgataggtcatcttgagttattcttagtatgttcatcaatcatt 202  Q
      ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||| |||| |||||    
T  32139281 ttgtgcaaagagcctagttttcttctcttaaaccctaagtaaccatatgttattgatgacaggtcatcttacgttattcttagtatgtttatcagtcatt 32139380  T
Q  203 ttcagtaggttttacatc 220  Q
    || || ||||||||||||    
T  32139381 tttagcaggttttacatc 32139398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 30999107 - 30999252
Alignment:
Q  1 cgcctgggacaacattggttgctgcctcaggcgcccttgcgtgtaactctaggcgcccagatgcaggcataaagtggattttgcttattttccaagctgg 100  Q
    |||||| || ||||||  ||| |||||||||||||| |||||||| ||| ||||||||||||||||| | |||  |  ||||||||  |||||||  |||    
T  30999107 cgcctgtgataacatttcttgttgcctcaggcgcccctgcgtgtagctccaggcgcccagatgcaggtaaaaacggatttttgcttgctttccaatatgg 30999206  T
Q  101 atcagtgcataaagcctagttttcttctcttaaaccctaagtaacc 146  Q
     || ||| |||||||||||||||||||| | |||||||||||||||    
T  30999207 gtcggtggataaagcctagttttcttctatgaaaccctaagtaacc 30999252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 32141373 - 32141455
Alignment:
Q  138 taagtaaccatatgttattgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttacatc 220  Q
    |||||||| |||||||||| |||||||||||||||  ||||||||||||||||| ||   ||||||| |||||||||||||||    
T  32141373 taagtaactatatgttattcatgataggtcatcttacgttattcttagtatgtttattggtcatttttagtaggttttacatc 32141455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 15454212 - 15454145
Alignment:
Q  77 gattttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaa 144  Q
    ||||||| || ||||||||||||||| || | | ||||| |||||||| |||||||||||||||||||    
T  15454212 gattttgtttgttttccaagctggattagaggaaaaagcatagttttcatctcttaaaccctaagtaa 15454145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 19949219 - 19949153
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaac 145  Q
    |||||||| |||| ||||||||||| ||| |||||||||| ||||  |||||||| |||||||||||    
T  19949219 ttttgcttgtttttcaagctggatcggtggataaagcctaatttttatctcttaatccctaagtaac 19949153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 16157082 - 16157148
Alignment:
Q  154 attgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttacatc 220  Q
    |||||||| ||||||||||   |||||||||| |||||  ||| |||||||||||||||||| ||||    
T  16157082 attgatgacaggtcatcttacattattcttagcatgtttttcagtcattttcagtaggtttttcatc 16157148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 35708185 - 35708250
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaac 145  Q
    |||||||| |||| ||||||||||| | |||||| ||| | |||||||||||||| |||||||||||    
T  35708185 ttttgcttgtttttcaagctggatcggcgcataa-gcccaattttcttctcttaatccctaagtaac 35708250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 51885044 - 51885101
Alignment:
Q  89 tttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaacc 146  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  51885044 tttccaagctggatcggtgcagaaagcctagttttcttctcttaaaccctaagtaacc 51885101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 27303130 - 27303197
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaacc 146  Q
    |||||||| |||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||    
T  27303130 ttttgcttgttttccaagctggatcggtgcagaaagcccaattttcttctcttaaaccctaagtaacc 27303197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 9849707 - 9849768
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttac 217  Q
    |||||| ||||||||||  |||||||||||||||||  ||| ||||||| ||||||||||||    
T  9849707 tgatgacaggtcatcttacgttattcttagtatgtttttcagtcatttttagtaggttttac 9849768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 18898421 - 18898472
Alignment:
Q  88 ttttccaagctggatcagtgcataaagcctagttttcttctcttaaacccta 139  Q
    ||||||||||| |||||||||| |||||| | ||||||||||| ||||||||    
T  18898421 ttttccaagctagatcagtgcaaaaagcccaattttcttctctgaaacccta 18898472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 25314949 - 25314882
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaacc 146  Q
    |||||||| ||||||||||||||||| || | || |   ||||||||||||||||||| |||||||||    
T  25314949 ttttgcttgttttccaagctggatcattggaaaatgttcagttttcttctcttaaaccttaagtaacc 25314882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 5676679 - 5676712
Alignment:
Q  118 agttttcttctcttaaaccctaagtaaccatatg 151  Q
    ||||||||||||||||||||||||||| ||||||    
T  5676679 agttttcttctcttaaaccctaagtaatcatatg 5676712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 25025203 - 25025142
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttac 217  Q
    |||||| ||||||||||  ||||||||||| |||||  ||| ||||||| ||||||||||||    
T  25025203 tgatgacaggtcatcttacgttattcttagcatgtttttcagtcatttttagtaggttttac 25025142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 15166565 - 15166505
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||| ||||||||||   |||||||||| |||||  ||| |||||||||||||||||||    
T  15166565 tgatgacaggtcatcttacattattcttagcatgtttttcagtcattttcagtaggtttta 15166505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 15192637 - 15192701
Alignment:
Q  80 tttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaa 144  Q
    ||||||| |||| |||| |||||  ||||| |||||  |||||||||||||||||| ||||||||    
T  15192637 tttgcttgtttttcaaggtggattggtgcaaaaagctcagttttcttctcttaaactctaagtaa 15192701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 8053 - 8132
Alignment:
Q  71 aaagtggattttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaaccatatg 151  Q
    ||||| |||||||||| ||||||| | |||||| ||||  |||||||||||||||||||||||||||| ||||||||||||    
T  8053 aaagttgattttgcttgttttccatgttggatcggtgcgaaaagcctagttttcttctcttaaaccct-agtaaccatatg 8132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 22230153 - 22230220
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaacc 146  Q
    ||||| |||||||||||||||| || ||||| |||||| |||||||||||| ||||||||||||||||    
T  22230153 ttttggttattttccaagctgggtcggtgcaaaaagcccagttttcttctcataaaccctaagtaacc 22230220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 22755367 - 22755444
Alignment:
Q  78 attttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaaccatatgttat 155  Q
    ||||||||| |||||||||||||||||||| |||||||| | || | ||||||||| || |||||||||  |||||||    
T  22755367 attttgcttgttttccaagctggatcagtggataaagcccaattcttttctcttaacccataagtaacctaatgttat 22755444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 23338988 - 23338928
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||| ||||||||||  ||||||||||| |||||  ||||||||||||| |||||||||    
T  23338988 tgatgacaggtcatcttaggttattcttagcatgtttttcaatcattttcattaggtttta 23338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 24842113 - 24842169
Alignment:
Q  83 gcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaacccta 139  Q
    |||| |||||||||||||||| ||||| ||||| ||| ||||||||| |||||||||    
T  24842113 gcttgttttccaagctggatcggtgcaaaaagcttagctttcttctcctaaacccta 24842169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 26329753 - 26329702
Alignment:
Q  88 ttttccaagctggatcagtgcataaagcctagttttcttctcttaaacccta 139  Q
    |||||||||||||||| ||||| |||||  |||||||||||| |||||||||    
T  26329753 ttttccaagctggatcggtgcaaaaagctcagttttcttctcctaaacccta 26329702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 17028707 - 17028736
Alignment:
Q  115 cctagttttcttctcttaaaccctaagtaa 144  Q
    ||||||||||||||||||||||||||||||    
T  17028707 cctagttttcttctcttaaaccctaagtaa 17028736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 23387546 - 23387607
Alignment:
Q  155 ttgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    ||||||||||||| ||||  ||||||| ||| |||||  ||| |||||||||||||||||||    
T  23387546 ttgatgataggtcgtcttatgttattcgtagcatgtttttcagtcattttcagtaggtttta 23387607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 19218902 - 19218832
Alignment:
Q  80 tttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaaccatat 150  Q
    ||||||||||||||||| ||||| |||| | |||||| ||||||||||||||||||| ||||||| |||||    
T  19218902 tttgcttattttccaagatggatgagtgaaaaaagcccagttttcttctcttaaaccttaagtaatcatat 19218832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 52935533 - 52935594
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttac 217  Q
    |||||||||||||||||  ||||||||||| |||||  ||||||||||||||||||||||||    
T  52935533 tgatgataggtcatcttacgttattcttagcatgtttttcaatcattttcagtaggttttac 52935594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 11521585 - 11521652
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaacc 146  Q
    |||||||| |||||||||||||| | | | ||||||||||||||||||||||||| |||| |||||||    
T  11521585 ttttgcttgttttccaagctggaccggcgaataaagcctagttttcttctcttaatccctcagtaacc 11521652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 7805839 - 7805775
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttacatc 220  Q
    |||||| ||||||||||  ||||||||||| |||||  |||||||||||||||| ||||||||||    
T  7805839 tgatgacaggtcatcttacgttattcttagcatgtttttcaatcattttcagtatgttttacatc 7805775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 819846 - 819908
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttaca 218  Q
    |||||||||||||||||  ||||||||||| |||||  ||| ||| |||||||||||||||||    
T  819846 tgatgataggtcatcttacgttattcttagcatgtttttcagtcaatttcagtaggttttaca 819908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 19263594 - 19263533
Alignment:
Q  81 ttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagt 142  Q
    |||||||||||||||| ||||| |||| | |||  | |||||||||||||||||||||||||    
T  19263594 ttgcttattttccaagatggattagtggaaaaattccagttttcttctcttaaaccctaagt 19263533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 20886966 - 20886901
Alignment:
Q  155 ttgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttacatc 220  Q
    ||||||| ||||||||||  ||||||||||| |||||  |||||| |||||| |||||||||||||    
T  20886966 ttgatgacaggtcatcttacgttattcttagcatgtttttcaatcgttttcaataggttttacatc 20886901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 19912678 - 19912617
Alignment:
Q  155 ttgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    ||||||| ||||||||||  ||||||||||| || ||  ||| |||||||||||||||||||    
T  19912678 ttgatgacaggtcatcttacgttattcttagcatatttttcagtcattttcagtaggtttta 19912617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 12517387 - 12517327
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||| ||||||||||  ||||||||||| || ||  ||| |||||||||||||||||||    
T  12517387 tgatgacaggtcatcttacgttattcttagcatctttttcagtcattttcagtaggtttta 12517327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 21828910 - 21828846
Alignment:
Q  80 tttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaa 144  Q
    |||||||||||| |||| || ||| ||| | |||||||||||||||||||  || ||||||||||    
T  21828910 tttgcttatttttcaagatgaatcggtggaaaaagcctagttttcttctccgaacccctaagtaa 21828846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 22470399 - 22470463
Alignment:
Q  153 tattgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttac 217  Q
    ||||||||| | ||||||||  ||||||||||| |||||  ||| |||||||||||| |||||||    
T  22470399 tattgatgacatgtcatcttacgttattcttagcatgtttttcagtcattttcagtatgttttac 22470463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 23521419 - 23521346
Alignment:
Q  71 aaagtggattttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaa 144  Q
    |||||||||||||||| ||||||||| |||||| ||||| |||||| | |||||||| ||||||| ||||||||    
T  23521419 aaagtggattttgcttgttttccaagttggatcggtgcaaaaagcccaattttcttcccttaaactctaagtaa 23521346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 21663088 - 21663159
Alignment:
Q  154 attgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttt-acatcaaaa 224  Q
    |||||||| ||||||||||  ||||||||||| |||||  ||| |||||||||||||||||| |||||||||    
T  21663088 attgatgacaggtcatcttacgttattcttagcatgtttttcagtcattttcagtaggttttaacatcaaaa 21663159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 23519449 - 23519369
Alignment:
Q  71 aaagtggattttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaaccatatg 151  Q
    |||||||||||  ||| |||| |||| ||||| |||||| ||| |  | |||||||||||||||||| |||||||||||||    
T  23519449 aaagtggatttaacttgtttttcaagttggattagtgcaaaaaacacaattttcttctcttaaacccaaagtaaccatatg 23519369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 25726333 - 25726297
Alignment:
Q  119 gttttcttctcttaaaccctaagtaaccatatgttat 155  Q
    |||||||||||||||||||||||||| ||||||||||    
T  25726333 gttttcttctcttaaaccctaagtaatcatatgttat 25726297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 25734741 - 25734705
Alignment:
Q  119 gttttcttctcttaaaccctaagtaaccatatgttat 155  Q
    |||||||||||||||||||||||||| ||||||||||    
T  25734741 gttttcttctcttaaaccctaagtaatcatatgttat 25734705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 27460586 - 27460522
Alignment:
Q  80 tttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaa 144  Q
    ||||||||||||||  |||||||  ||| | ||||| ||||||||||||||||| ||||||||||    
T  27460586 tttgcttattttccgggctggattggtggaaaaagcttagttttcttctcttaacccctaagtaa 27460522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 18300708 - 18300674
Alignment:
Q  121 tttcttctcttaaaccctaagtaaccatatgttat 155  Q
    |||||||||||||||||||||||| ||||||||||    
T  18300708 tttcttctcttaaaccctaagtaatcatatgttat 18300674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 21451690 - 21451624
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaac 145  Q
    |||||||| |||||| ||||||||| | | |||||||| | ||||||||||||||  ||||||||||    
T  21451690 ttttgcttgttttcctagctggatcggcggataaagcccaattttcttctcttaatacctaagtaac 21451624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 729233 - 729173
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||| ||||||||||  ||||||||||| ||| |  ||| |||||||||||||||||||    
T  729233 tgatgaaaggtcatcttacgttattcttagcatgcttttcagtcattttcagtaggtttta 729173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 12210362 - 12210302
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||||||||||||||   |||||||||| |||||  ||| ||| |||||||||||||||    
T  12210362 tgatgataggtcatcttacattattcttagcatgtttttcagtcaatttcagtaggtttta 12210302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 21450864 - 21450804
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||| |||||||||| ||||||  |||| |||||  ||| |||||||||||||||||||    
T  21450864 tgatgacaggtcatcttaagttatctttagcatgtttctcagtcattttcagtaggtttta 21450804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 24480121 - 24480062
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttt 215  Q
    |||||||||||||||||  ||||||||||| ||||   ||||||||||||||||||||||    
T  24480121 tgatgataggtcatcttacgttattcttagcatgtatttcaatcattttcagtaggtttt 24480062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 24469894 - 24469836
Alignment:
Q  157 gatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttt 215  Q
    ||||| ||||||||||  |||||| ||||||||||  ||||||||||||||||||||||    
T  24469894 gatgacaggtcatcttacgttatttttagtatgtttttcaatcattttcagtaggtttt 24469836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 13723912 - 13723853
Alignment:
Q  91 tccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaaccatatg 151  Q
    |||||| |||||||||| | |||||| ||||||||||||||||||||||| ||| ||||||    
T  13723912 tccaagttggatcagtgga-aaagcccagttttcttctcttaaaccctaattaatcatatg 13723853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 22564549 - 22564610
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttac 217  Q
    ||||| |||||||||||  ||||||||||| |||||  ||| ||||||| ||||||||||||    
T  22564549 tgatgttaggtcatcttacgttattcttagcatgtttttcagtcatttttagtaggttttac 22564610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 22262785 - 22262849
Alignment:
Q  80 tttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagtaa 144  Q
    ||||||| ||||||||| |||||  ||| | || ||||||||||||| | |||||||||||||||    
T  22262785 tttgcttgttttccaagttggattggtggaaaaggcctagttttctttttttaaaccctaagtaa 22262849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 3400239 - 3400293
Alignment:
Q  89 tttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagta 143  Q
    |||||||| |||||||||| | ||| || ||||||||||||||||||||||||||    
T  3400239 tttccaagatggatcagtggaaaaaacccagttttcttctcttaaaccctaagta 3400293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 315533 - 315589
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaac 135  Q
    |||||||| ||||||||||||||  || | ||||||||| |||||||||||||||||    
T  315533 ttttgcttgttttccaagctggaagagcgaataaagccttgttttcttctcttaaac 315589  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 20446618 - 20446681
Alignment:
Q  80 tttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaagta 143  Q
    ||||||| ||||||||| |||||||  | |||||||  |||||||||||||||| |||||||||    
T  20446618 tttgcttgttttccaagatggatcaacgaataaagctcagttttcttctcttaatccctaagta 20446681  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 3173815 - 3173749
Alignment:
Q  148 tatgttattgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttt 214  Q
    ||||| |||||||| || |||||||| ||||||||||| |||||  ||| ||||||||| |||||||    
T  3173815 tatgtcattgatgacagatcatcttgcgttattcttagcatgtttttcagtcattttcattaggttt 3173749  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 7493689 - 7493751
Alignment:
Q  79 ttttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccctaag 141  Q
    |||||||| |||||||||||||| | ||| | ||| || ||||||||| ||||||||||||||    
T  7493689 ttttgcttgttttccaagctggacctgtgtaaaaaacccagttttcttttcttaaaccctaag 7493751  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 151
Target Start/End: Complemental strand, 7777759 - 7777726
Alignment:
Q  118 agttttcttctcttaaaccctaagtaaccatatg 151  Q
    ||||||||| ||||||||||||||||||||||||    
T  7777759 agttttcttatcttaaaccctaagtaaccatatg 7777726  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 20470442 - 20470405
Alignment:
Q  118 agttttcttctcttaaaccctaagtaaccatatgttat 155  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  20470442 agttttcttctattaaaccctaagtaatcatatgttat 20470405  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 26249074 - 26249135
Alignment:
Q  155 ttgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    ||||||| ||||||||||  ||||||| ||| |||||  ||| |||||||||||||||||||    
T  26249074 ttgatgacaggtcatcttacgttattcatagcatgtttttcagtcattttcagtaggtttta 26249135  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 3585542 - 3585582
Alignment:
Q  176 ttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    |||||||||| |||||  |||||||||||||||||||||||    
T  3585542 ttattcttagcatgtttttcaatcattttcagtaggtttta 3585582  T

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Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 88436 - 88497
Alignment:
Q  156 tgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggttttac 217  Q
    |||||| | ||||||||  ||||||||||| |||||  ||||||||||||||||||||||||    
T  88436 tgatgacatgtcatcttacgttattcttagcatgtttttcaatcattttcagtaggttttac 88497  T

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Target: scaffold0103 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 37281 - 37225
Alignment:
Q  81 ttgcttattttccaagctggatcagtgcataaagcctagttttcttctcttaaaccc 137  Q
    |||||| |||| ||||||||||| | | |||||| ||||||||||||||||||||||    
T  37281 ttgcttgttttgcaagctggatcggcggataaagactagttttcttctcttaaaccc 37225  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 4922 - 4861
Alignment:
Q  155 ttgatgataggtcatcttgagttattcttagtatgttcatcaatcattttcagtaggtttta 216  Q
    ||||||||||||| ||||  ||||||| ||| |||||  ||| |||||||||||||||||||    
T  4922 ttgatgataggtcgtcttatgttattcgtagcatgtttttcagtcattttcagtaggtttta 4861  T

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