View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_2D_low_64 (Length: 216)

Name: NF9753_2D_low_64
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_2D_low_64
NF9753_2D_low_64
[»] chr6 (10 HSPs)
chr6 (1-180)||(31564938-31565117)
chr6 (2-203)||(33414568-33414769)
chr6 (8-203)||(33269541-33269740)
chr6 (8-203)||(33258194-33258391)
chr6 (5-203)||(33395052-33395252)
chr6 (76-192)||(33384040-33384156)
chr6 (8-153)||(33278972-33279113)
chr6 (1-87)||(33293090-33293176)
chr6 (26-150)||(33280358-33280482)
chr6 (146-190)||(33293034-33293078)
[»] chr2 (1 HSPs)
chr2 (1-203)||(17447778-17447981)
[»] scaffold0428 (3 HSPs)
scaffold0428 (8-203)||(2315-2512)
scaffold0428 (8-153)||(15140-15281)
scaffold0428 (26-150)||(13771-13895)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 31564938 - 31565117
Alignment:
Q  1 cctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  31564938 cctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgtt 31565037  T
Q  101 ctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565038 ctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

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Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 33414769 - 33414568
Alignment:
Q  2 ctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttc 101  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||||| |||  ||| ||||||    
T  33414769 ctcaggaaaaagggtctctcatccgctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttc 33414670  T
Q  102 taattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggt 201  Q
    ||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  33414669 taattgaagtgaactgtgaaacggactttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggt 33414570  T
Q  202 tc 203  Q
    ||    
T  33414569 tc 33414568  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 33269740 - 33269541
Alignment:
Q  8 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata----cattcacgattcacacattagtgttcta 103  Q
    ||||||||||||||||||||||| ||||| || | ||||| ||  ||||||| |||||||| ||||||    ||||||| || ||  |||  ||||||||    
T  33269740 aaaaagggtctctcatccgctgataagaagtctgcaagactagcagctgaagaaagaatcggtacatatatacattcacaatgcatgcatcggtgttcta 33269641  T
Q  104 attgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttc 203  Q
    ||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  33269640 attgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttc 33269541  T

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Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 33258391 - 33258194
Alignment:
Q  8 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaatt 106  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || || ||||||||||||| |||||||||||    
T  33258391 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaatt 33258292  T
Q  107 gaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc 203  Q
    ||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || ||||||||||||    
T  33258291 gaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 33258194  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 33395252 - 33395052
Alignment:
Q  5 agaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaa 104  Q
    |||| ||||||||||||||| ||||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||||| ||| |||   |||||| |    
T  33395252 agaacaaagggtctctcatcagctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctga 33395153  T
Q  105 ttgaagtgaaatgtgaaacggactttatcgg--tagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggtt 202  Q
    |||||||||| |||||||| |||||| | ||   |||||||| | |||||||||||| |||  ||||||| ||||||||   ||||||||||||||||||    
T  33395152 ttgaagtgaactgtgaaaccgactttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggtt 33395053  T
Q  203 c 203  Q
    |    
T  33395052 c 33395052  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 33384156 - 33384040
Alignment:
Q  76 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 175  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  176 atgcaagttgctgcttg 192  Q
    |||||||| ||||||||    
T  33384056 atgcaagtggctgcttg 33384040  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 33279113 - 33278972
Alignment:
Q  8 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattg 107  Q
    ||||||||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  33279113 aaaaagggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattcacgattcacacatcagtgttctaattg 33279018  T
Q  108 aagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 153  Q
    |||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279017 aagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33293176 - 33293090
Alignment:
Q  1 cctcagaaaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattc 87  Q
    ||||||||||||||||||||||| |||||| ||||||||| |||||| ||  |||||||||||||| | ||||||||||||||||||    
T  33293176 cctcagaaaaaagggtctctcattcgctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgattc 33293090  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 33280482 - 33280358
Alignment:
Q  26 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 125  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  33280482 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 33280383  T
Q  126 actttatcggtagaagtgagaaatt 150  Q
    ||||| | || ||||||||||||||    
T  33280382 acttttttggcagaagtgagaaatt 33280358  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 33293078 - 33293034
Alignment:
Q  146 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgct 190  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgct 33293034  T

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Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 17447778 - 17447981
Alignment:
Q  1 cctcagaaaaaaggg-tctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgt 99  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||  |  |||||||||||||||| |||||||||||||||| ||| |||  |||     
T  17447778 cctcagaaaaaaggggtctctcatccgctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtgg 17447877  T
Q  100 tctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacag 199  Q
    |||||||||| |||| | |||||| |||||| | || ||||| |||| |||||||||||| ||| ||||||||||||||||||| ||||||| |||||||    
T  17447878 tctaattgaattgaactttgaaaccgactttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacag 17447977  T
Q  200 gttc 203  Q
    ||||    
T  17447978 gttc 17447981  T

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Target: scaffold0428 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 2512 - 2315
Alignment:
Q  8 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaatt 106  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || || ||||||||||||| |||||||||||    
T  2512 aaaaagggtctctcatccgctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaatt 2413  T
Q  107 gaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttc 203  Q
    ||||||||  ||||||| |||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || ||||||||||||    
T  2412 gaagtgaacggtgaaaccgactttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttc 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 15140 - 15281
Alignment:
Q  8 aaaaagggtctctcatccgctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattg 107  Q
    ||||||||||||| ||| ||||||||||||||||| |    || | || |||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  15140 aaaaagggtctcttatcagctgacaagaaatccggca----agctactaaaggaagaattggtacatacattcacgattcacacatcagtgttctaattg 15235  T
Q  108 aagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 153  Q
    |||| || |||||||| ||||||   || |||||| ||||||||||    
T  15236 aagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 13771 - 13895
Alignment:
Q  26 gctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 125  Q
    |||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || |    
T  13771 gctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactg 13870  T
Q  126 actttatcggtagaagtgagaaatt 150  Q
    ||||| | || ||||||||||||||    
T  13871 acttttttggcagaagtgagaaatt 13895  T

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