View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_69 (Length: 209)
Name: NF9753_2D_low_69
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_69 |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 35128276 - 35128378
Alignment:
| Q |
5 |
taatcctaaattt-agtgggacatctttactgatggttcctaattctctttacaagatcttccttgtttgaaaaggatggatttgatcaactccaagtat |
103 |
Q |
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| T |
35128276 |
taatcctaaattttattgggacatctttactgatggttcctaattctctttacaagatcttccttgtttgaaaaggatggatttgatcaactccaagtat |
35128375 |
T |
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| Q |
104 |
ctt |
106 |
Q |
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||| |
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| T |
35128376 |
ctt |
35128378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 35128196 - 35128111
Alignment:
| Q |
102 |
atctttagacatattgtatagcagt-attgtgtaatgggagttatttatccatcttgtccttcatctttttgtcttctcctcaaga |
186 |
Q |
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| T |
35128196 |
atctttatacatattgtatagcagttattgtgtaatgggagttatttatccatcttgtccttcatctttttgtcttctcctcaaga |
35128111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 35042871 - 35042787
Alignment:
| Q |
21 |
gggacatctttactgatggttcctaattctctttacaagatcttccttgtttgaaaaggatggatttgatcaactccaagtatctt |
106 |
Q |
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| T |
35042871 |
gggatatctttactgatggttgc-aattctctttacaggatctcccttatttgaaaaggatggatttgagcaactccaagtatctt |
35042787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 35102914 - 35102867
Alignment:
| Q |
59 |
gatcttccttgtttgaaaaggatggatttgatcaactccaagtatctt |
106 |
Q |
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| T |
35102914 |
gatctcccttatttgaaaaggatggatttgagcaactccaagtttctt |
35102867 |
T |
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