View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_74 (Length: 205)
Name: NF9753_2D_low_74
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_74 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 3045626 - 3045438
Alignment:
| Q |
4 |
cttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttcttcttatcatcatgaaacaaagctttttt-acttcttctaga |
102 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
3045626 |
cttcatgcaggtcttgaaatcatctatggcttttataaactcatcatacttttccttcttcttatcatcatgaaacaaagctttttttacttcttccaga |
3045527 |
T |
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| Q |
103 |
aatccaattccaaattcatgtgccatggtttcagcgatcggaagcttatgttgttgtggtagtttttattaagttagggtttctgatgt |
191 |
Q |
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| T |
3045526 |
aatccaattccaaattcatgtgccatggtttcagcgatcggaagcttatgttgttgtggtagtttttattaagttagggtttctgatgt |
3045438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 33468793 - 33468839
Alignment:
| Q |
11 |
caggtcttgaaatcatctatgtcttttataaactcatcatacttttc |
57 |
Q |
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| T |
33468793 |
caggtcttaaaagcatgtatgtcttttataaactcttcatacttttc |
33468839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 34604010 - 34603960
Alignment:
| Q |
13 |
ggtcttgaaatcatctatgtcttttataaactcatcatacttttccttctt |
63 |
Q |
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| T |
34604010 |
ggtcttaaaagcatctatgtcttttataaactcttcatactcttccctctt |
34603960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 34725287 - 34725237
Alignment:
| Q |
13 |
ggtcttgaaatcatctatgtcttttataaactcatcatacttttccttctt |
63 |
Q |
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| T |
34725287 |
ggtcttaaaagcatctatgtcttttataaactcttcatactcttccctctt |
34725237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 30865339 - 30865466
Alignment:
| Q |
1 |
attcttcatgcaggtcttgaaatcatctatgtcttttataaactcatcatacttttccttcttcttatcatcatgaaaca-aagcttttttacttcttct |
99 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||| || ||||||||||| ||| |
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| T |
30865339 |
attcttcatgcaggtcttgaaatcatctatgtctttcataaacccatcatactttcc---actcttatcatcatgaaacacaactttttttacttcctct |
30865435 |
T |
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| Q |
100 |
agaaatccaattccaaattcatgtgccatgg |
130 |
Q |
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| T |
30865436 |
agaaactcaattccagattcctttgccatgg |
30865466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 38868919 - 38868965
Alignment:
| Q |
5 |
ttcatgcaggtcttgaaatcatctatgtcttttataaactcatcata |
51 |
Q |
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| T |
38868919 |
ttcatgcatctcttgaaatcatctatgtcttttacaaacttatcata |
38868965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 1206478 - 1206524
Alignment:
| Q |
5 |
ttcatgcaggtcttgaaatcatctatgtcttttataaactcatcata |
51 |
Q |
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|||||||||||||||||||||| ||||||||| | ||| |||||||| |
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| T |
1206478 |
ttcatgcaggtcttgaaatcatttatgtctttcacaaattcatcata |
1206524 |
T |
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