View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_77 (Length: 202)
Name: NF9753_2D_low_77
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 47438631 - 47438456
Alignment:
| Q |
1 |
ctagtcctatattttttatgatgtactctttgattttgaattaaatgcattaagtttacttctnnnnnnnnncagtagcactatattggaaaatctgnnn |
100 |
Q |
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| T |
47438631 |
ctagtcctatattttttatgatgtactctttgattttgaattaaatgcattaagtttacttctaaaaaaaa-cagtagcactatattggaaaatctgaaa |
47438533 |
T |
|
| Q |
101 |
nnnnnnnnnnngttaaaccaattttagtccttcaaatattgtattaatacgattttattttctcttcttttgcgatc |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47438532 |
aaataaaaaaagttaaaccaattttagtccttcaaatattgtattaatacgattttattttctcttcttttgcgatc |
47438456 |
T |
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