View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_8 (Length: 627)
Name: NF9753_2D_low_8
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 18323725 - 18323202
Alignment:
| Q |
1 |
ctacataaattaaatattaagttccataaaggagtattctgattagttaaagaaaaacacgattgcacctgtttatgaaggtccgttttgatttgcaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18323725 |
ctacataaattaaatattaagttccataaaggagtattgtgatcagttaaagaaaaacacgattgcacctgtttatgaaggtccgttttgatttgcaaaa |
18323626 |
T |
|
| Q |
101 |
tgaacaaatatcggacataatataggatataaccttcctaaattctaggtgtcgcaatttttcttcttcttaatctatcaaagagcggtgatttagcttg |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
18323625 |
tgaacaaatattggacataatataggatataaccttcctaaattctaggtgtcgcaatttttcttcttcttgatctaccaaagagcggtgatttagcttg |
18323526 |
T |
|
| Q |
201 |
ttaacttccaccttaataagaagctgcatcaaaattttgtctttaatttaaattgtttgattaggcacgactcgtgccgcacgagaaaccggttagtttg |
300 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18323525 |
ctaacttgcaccttagtaagaagctgcatcaaaattttgtctttaatttaaattgtttgattaggcacgactcgtgccgcacgaggaaccggttagtttg |
18323426 |
T |
|
| Q |
301 |
gttagctaccgagtaccaagccatccagttaaagacagaatcttttgcataggttaaccaataattagcaccctgtcctaagcaaatcattcctttatca |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18323425 |
gttaactaccgagtaccaagccatccagttaaagacagaatcttttgcataggttaaccaataattagcaccctgtcctaagcaaatcattcctttatca |
18323326 |
T |
|
| Q |
401 |
cgggtgtacgaaggtgcatattttactgtctttcacatgttttcaattcaatgagagtggttaattaactaattctctcccacaatataggagattttag |
500 |
Q |
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| T |
18323325 |
cgggtgtacgaaggtgcatattttactgtctttcacatgttttcaattcaaagagagtggttaattaactaattctctcccacaatataggagattttag |
18323226 |
T |
|
| Q |
501 |
tggtacaagtttatatacatatag |
524 |
Q |
| |
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| T |
18323225 |
tggtacaagtttatatacatatag |
18323202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 548 - 591
Target Start/End: Original strand, 615650 - 615693
Alignment:
| Q |
548 |
tacgtgaaagagattcgttcttttccatcactttgatatatatg |
591 |
Q |
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| T |
615650 |
tacgtgaaagagattcgttcttttccatcactttgatatatatg |
615693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 548 - 591
Target Start/End: Complemental strand, 498660 - 498617
Alignment:
| Q |
548 |
tacgtgaaagagattcgttcttttccatcactttgatatatatg |
591 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
498660 |
tacgtgaaagagattcgttcttttccatcactttgacatatatg |
498617 |
T |
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