View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_2D_low_9 (Length: 619)
Name: NF9753_2D_low_9
Description: NF9753_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_2D_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 26 - 360
Target Start/End: Complemental strand, 43620561 - 43620223
Alignment:
| Q |
26 |
tatatatcaccttgttaaataggatgcctaatagagcaagttcag-tagctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctccta |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43620561 |
tatatatcaccttgttaaataggatgcctaatagagcaagttcagatagctttgtcaatatcagcatcatcaaatattatgaggggtgacttgcctccta |
43620462 |
T |
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| Q |
125 |
attcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttgtgttgaaccagtaaagctaacctaaacatacataaa |
224 |
Q |
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| T |
43620461 |
attcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttgtgttgaaccagtaaagctaacctaaacatacataaa |
43620362 |
T |
|
| Q |
225 |
aaattaaagcaatattatatattcaacatc---atggtccatgttttgatgtcccagtctcccagccagagtgacatcgattatcaactacatttgactg |
321 |
Q |
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| T |
43620361 |
aaattaaagcaatattatatattcaacatcaatatggtccatgttttgatgtcccagtctcccagccagagtgacatcgattatcaactacatttgactg |
43620262 |
T |
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| Q |
322 |
cgattccccacaacataaaaaatgtgacgtgactgttac |
360 |
Q |
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| T |
43620261 |
cgattctccacaacataaaaaatgtgacgtgactgttac |
43620223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 353 - 580
Target Start/End: Complemental strand, 43619616 - 43619389
Alignment:
| Q |
353 |
actgttaccaccacaattttaaatctcgcttactgcatcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattg |
452 |
Q |
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| T |
43619616 |
actgttaccaccacaattttaaatctcacttaccgcatcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattg |
43619517 |
T |
|
| Q |
453 |
atcactccatctgggattccagcctacaagaaggcaaaaacaaagaaaacacaatcaccttgagctcaagtaacatgtgatgtgctatgtatctcgacac |
552 |
Q |
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| T |
43619516 |
atcactccatctgggattccagcctacaagaaggcaaaaacaaagaaaacacaatcaccttgagctcaagtaacatgtgatgtgctatgtatctcgacac |
43619417 |
T |
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| Q |
553 |
ttcaaattattaatagtgtcgatgtgtt |
580 |
Q |
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| T |
43619416 |
ttcaaattattaatagtgtcgatgtgtt |
43619389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 43627180 - 43627035
Alignment:
| Q |
34 |
accttgttaaataggatgcctaatagagcaagttcagtagctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtg |
133 |
Q |
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| T |
43627180 |
accttgttagctaggatacccaaaagagctagctcaacagctttgtctatgtctgcatcatcgaaaattatgagaggtgacttgcctcctaattcaagtg |
43627081 |
T |
|
| Q |
134 |
aaacatgtttcaagttactcttagctgcagcttgcattatctcacg |
179 |
Q |
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| T |
43627080 |
aaacatgttttaaattactcttagctgcagcttgcattatttcacg |
43627035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 388 - 477
Target Start/End: Complemental strand, 43626898 - 43626809
Alignment:
| Q |
388 |
catcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
477 |
Q |
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|||| ||||||||||||||||| | ||||||||||||||| | |||||||||||||||||||| | |||||||| |||||| ||||||| |
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| T |
43626898 |
catctatgtccatgtgtgagctgattgcagcaccagcagttggaccaaatccgggtactacattcagcactccatttgggatcccagcct |
43626809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 32407384 - 32407515
Alignment:
| Q |
32 |
tcaccttgttaaataggatgcctaatagagcaagttcagtagctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaag |
131 |
Q |
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||||||| ||||||| ||||| | ||||||||||||| |||||| | || ||||||||||||||| |||| ||||||||| || |||||||||||||| |
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| T |
32407384 |
tcaccttattaaataaaatgccaaggagagcaagttcagcagctttattaacatcagcatcatcaaaaattaagaggggtgattttcctcctaattcaag |
32407483 |
T |
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| Q |
132 |
tgaaacatgtttcaagttactcttagctgcag |
163 |
Q |
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| T |
32407484 |
tgaaactggtttcaaattacttctagctgcag |
32407515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 32407657 - 32407745
Alignment:
| Q |
389 |
atcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagcct |
477 |
Q |
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||||||||||||||||||||| | |||||| || ||||| || |||||||| ||||||||||||| |||||||||||| |||||||||| |
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| T |
32407657 |
atcaatgtccatgtgtgagcttattgcagctcctgcagttgcaccaaatccaggtactacattgagcactccatctggaattccagcct |
32407745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 32434171 - 32434075
Alignment:
| Q |
382 |
ttactgcatcaatgtccatgtgtgagctcactgcagcaccagcagtagctccaaatccgggtactacattgatcactccatctgggattccagccta |
478 |
Q |
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||||||||||||||||||| |||||| | | |||||| |||||||| | |||||||| || | |||||||| |||||||||||| || |||||||| |
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| T |
32434171 |
ttactgcatcaatgtccatatgtgaggttattgcagctccagcagttgaaccaaatcctggcagtacattgagcactccatctggaataccagccta |
32434075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 32434437 - 32434311
Alignment:
| Q |
46 |
aggatgcctaatagagcaagttcagtagctttttcaatatcagcatcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttca |
145 |
Q |
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| T |
32434437 |
aggattccaaatagagcgagatcaacagctttatcaacatcagcatcatcgaaaattaaaacaggcgacttgcctcctaattcaagtgataccggcttca |
32434338 |
T |
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| Q |
146 |
agttactcttagctgcagcttgcatta |
172 |
Q |
| |
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| T |
32434337 |
aattactcaatgctgcagcctgcatta |
32434311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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