View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_10 (Length: 393)
Name: NF9753_high_10
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 40729556 - 40729185
Alignment:
| Q |
1 |
tccatcagaacagaaaagcagaaatgtggggatggatgataagggaaggccggacggcatcatcatcagcatcatggtcactaacagcctggaacctccg |
100 |
Q |
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| T |
40729556 |
tccatcagaacagaa--gcagaaatgtggggatggatgataagggaaggccggacggcatcatcagcagcatcatggtcactaacagcctggaacctccg |
40729459 |
T |
|
| Q |
101 |
tctcctccgtaacatgggtggcggtcctcgcaccttccccggcggcgtaagcaaatggaaatggaaacgtatgcacgaaaaacgcgccaaagagaaacag |
200 |
Q |
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| T |
40729458 |
tctcctccgtaacatgggtggcggtcctcgcaccttccccggcggcgtaagcaaatggaaatggaaacgtatgcacgaaaaacgcgccaaagagaaacag |
40729359 |
T |
|
| Q |
201 |
cgtaaccttctcgaacaagagaaacaactctaccaagctcgtattcgatctcacattcgctccaccctctcaccttcttcatattcatcttcctccacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40729358 |
cgtaaccttctcgaacaagagaaacaactctaccaagctcgtattcgatctcacattcgctccactctctcaccttcttcatattcatcttcctccacca |
40729259 |
T |
|
| Q |
301 |
ctcataaccctatttcccctgatcaacacatcaaagccctcgccgatcgtttcatgaaagacggtgctctagat |
374 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40729258 |
ctcataatcctatttcccctgatcaacacatcaaagccctcgccgatcgtttcatgaaagacggtgctctagat |
40729185 |
T |
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