View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_19 (Length: 340)
Name: NF9753_high_19
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_19 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 16021 - 16341
Alignment:
| Q |
2 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16021 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
16120 |
T |
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| Q |
102 |
taatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
201 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16121 |
taaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
16220 |
T |
|
| Q |
202 |
cttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttgga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16221 |
cttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttgga |
16320 |
T |
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| Q |
302 |
acgctgatgactctacaattc |
322 |
Q |
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||||||||||||||||||||| |
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| T |
16321 |
acgctgatgactctacaattc |
16341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 26189 - 26509
Alignment:
| Q |
2 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26189 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
26288 |
T |
|
| Q |
102 |
taatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
201 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26289 |
taaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
26388 |
T |
|
| Q |
202 |
cttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttgga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26389 |
cttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttgga |
26488 |
T |
|
| Q |
302 |
acgctgatgactctacaattc |
322 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26489 |
acgctgatgactctacaattc |
26509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 2 - 322
Target Start/End: Original strand, 36355 - 36675
Alignment:
| Q |
2 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36355 |
ccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttctacaaccaatc |
36454 |
T |
|
| Q |
102 |
taatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
201 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36455 |
taaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtatagtccttccaggagttagcaccgacaag |
36554 |
T |
|
| Q |
202 |
cttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttgga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36555 |
cttcacattgagcctgtagacaagatgccaagggagcacttcattgctggctgcagacatctcctccagatagcatcactccctggtgtttttctttgga |
36654 |
T |
|
| Q |
302 |
acgctgatgactctacaattc |
322 |
Q |
| |
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||||||||||||||||||||| |
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| T |
36655 |
acgctgatgactctacaattc |
36675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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