View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_20 (Length: 317)
Name: NF9753_high_20
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 29666924 - 29666622
Alignment:
| Q |
1 |
tttttggtaaacattataagacaaggtttaggagagagttgttggggaaagtttacgtataaatattaatgaagtggtcaagattaggtggatatatcat |
100 |
Q |
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| T |
29666924 |
tttttggtaaacattataagacaaggtttaggagagagttgttggggaaagtttacgtataaatattaatgaagtggtcaagattaggtggatatatcat |
29666825 |
T |
|
| Q |
101 |
ctgcagacatttataggaattattaggaacatatgtacggggtagttgctatgaacattgtatttgacatttttgcttttagaataa-ttgttacaaagc |
199 |
Q |
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| T |
29666824 |
ctgcagacatttataggaattattaggaacatatgtacggggtagttgctatgaaaattgtatttgacatttttgcttttagagtaatttgttacaaagc |
29666725 |
T |
|
| Q |
200 |
atgaagctttaagagatccaattaatttcaacacatttttatgatctcaaaaataaaaacaatcgcattcttataatctactaatgtgtgtactcttcaa |
299 |
Q |
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| T |
29666724 |
atgaagctttaagagatccaattaatttcaacacatttttatgatctcaaaaataaaaacaatcgcattcttataatctactaatgtgtgtactcttcaa |
29666625 |
T |
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| Q |
300 |
ctt |
302 |
Q |
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||| |
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| T |
29666624 |
ctt |
29666622 |
T |
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