View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_high_23 (Length: 304)
Name: NF9753_high_23
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 4409433 - 4409576
Alignment:
| Q |
5 |
tatgatggtcttatatatatagatatagtaccaagttgtaaatgattgatgcatttcaatgatcaaatgcatacacatatacaagtcatagaaaccaatc |
104 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4409433 |
tatgatggtcttata--tatagatatagtaccaagttgtaaatgattgatgcatttcaatgatcaaatgcatacacatatacaagtcatagaaaccagtc |
4409530 |
T |
|
| Q |
105 |
attctacaccagacatattagctttcaaataacagtctaatcttta |
150 |
Q |
| |
|
||||||||||| || |||||||||| ||||||| ||||||||||| |
|
|
| T |
4409531 |
attctacaccatactaattagctttcgaataacaatctaatcttta |
4409576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 4409583 - 4409666
Alignment:
| Q |
205 |
ttactatttagttttctacttataactaatattacatcatttccatttgtttttgttttgaagtggttgttactgggtgacaac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
4409583 |
ttactatttagttttctacttataactaatattacatcatttccatttgtttttgttttgaagtggatgttagtgggtgacaac |
4409666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University