View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_24 (Length: 295)
Name: NF9753_high_24
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 44136300 - 44136568
Alignment:
| Q |
19 |
cataattggcgacttcaatgacaacctatctccggaagataaacgaggtggcccttctcgtactgcctggctcattag--gattccaacaggtggtcacc |
116 |
Q |
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| T |
44136300 |
cataattggcgacttcaatgaccacctatctccggaagataaacgaggtggcccttctcgtactgcctggctcattagaggattccaacaggtggtcacc |
44136399 |
T |
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| Q |
117 |
gactgtaatttatatgatctacctcttcttggctaccaattcacttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44136400 |
gactgtaatttatatgatctacctcttcttggctaccaattcacttggttcaaaagtatcggcaccgcttcttcgaaggaagcccgtttagatcgtgctc |
44136499 |
T |
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| Q |
217 |
ttgttacttcctcctggcatgatctctacctgaatgcaactctgcaaactcttatggctccaatctctg |
285 |
Q |
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| T |
44136500 |
ttgttacttcctcctggcatgatctctacctgaatgcaactctgcaaactcttatggctccaatctctg |
44136568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 12462297 - 12462179
Alignment:
| Q |
117 |
gactgtaatttatatgatctacctcttcttggctaccaattcacttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctc |
216 |
Q |
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|||||||||||| |||| ||||| | |||| |||||||||||||||||| ||||||| || |||| || ||||| ||||||||| | ||| | || | |
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| T |
12462297 |
gactgtaatttacttgatatacctttgattggttaccaattcacttggttcaaaagtattggaaccgaatcctcgaaagaagcccgtcttgatagagccc |
12462198 |
T |
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| Q |
217 |
ttgttacttcctcctggca |
235 |
Q |
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|||| || ||||||||||| |
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| T |
12462197 |
ttgtcacgtcctcctggca |
12462179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 16859835 - 16859925
Alignment:
| Q |
145 |
ttggctaccaattcacttggttcgaaagtatcggcaccgcttcttcgaaggaagcccgtttagatggtgctcttgttacttcctcctggca |
235 |
Q |
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|||| |||||||||||||||||| ||||||| || |||| || ||||| ||||||||| | ||| | || ||||| || ||||||||||| |
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| T |
16859835 |
ttggttaccaattcacttggttcaaaagtattggaaccgaatcctcgaaagaagcccgtcttgatagagcccttgtcacgtcctcctggca |
16859925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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