View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_3 (Length: 527)
Name: NF9753_high_3
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 69 - 512
Target Start/End: Complemental strand, 39110853 - 39110410
Alignment:
| Q |
69 |
ttaagggtgaaatcaccaatagaatcacccctccgattggatttagttacgagaggatttaaatttcattgctagttagtctcgcataataaactttgac |
168 |
Q |
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| T |
39110853 |
ttaagggtgaaatcaccaatagaatcacccctccgattggatttagttacgagaggatttaaattccattgctagttagtctcgcataataaactttgac |
39110754 |
T |
|
| Q |
169 |
acatttacatgaaactttattttgttaacaccagcaatactagttacatcatgtnnnnnnncgaaaagtacatgtacattttcaatgaaattcttttatt |
268 |
Q |
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| T |
39110753 |
acatttacatgaaactttattttgttaacaccagcaatactagttacatcatgtaaaaaaacgaaaagtacatgtacattttcaatgaaattcttttatt |
39110654 |
T |
|
| Q |
269 |
gaaataatacaaacttcattattattcatcaatctctgtctattcttccttaagtgattctgcaattttactagcaatacagtatgctgtagattgaatg |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39110653 |
gaaataatacaaacttcattattattcatcaatctctgtctattcttccttaagtgattctgcaattttactagcaatacagtatgctgtagattgaatg |
39110554 |
T |
|
| Q |
369 |
gttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcatcaactgcac |
468 |
Q |
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| T |
39110553 |
gttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcatcaactgcac |
39110454 |
T |
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| Q |
469 |
cctcttcttcattcttacccattctacaacttcccatttgatgt |
512 |
Q |
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| T |
39110453 |
cctcttcttcattcttacccattctacaacttcccatttgatgt |
39110410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 511
Target Start/End: Complemental strand, 31321907 - 31321756
Alignment:
| Q |
360 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
459 |
Q |
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|||||||| || | |||||| ||||||||||| ||| | || | |||||| ||||||| ||| ||||||||| ||||||||||| || ||||| |||| |
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| T |
31321907 |
gattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
31321808 |
T |
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| Q |
460 |
caactgcaccctcttcttcattcttacccattctacaacttcccatttgatg |
511 |
Q |
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| T |
31321807 |
caacagcaccttccttttcattcactcccattctacaactccccatttgatg |
31321756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 511
Target Start/End: Complemental strand, 31334160 - 31334009
Alignment:
| Q |
360 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
459 |
Q |
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|||||||| || | |||||| ||||||||||| ||| | || | |||||| ||||||| ||| ||||||||| ||||||||||| || ||||| |||| |
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| T |
31334160 |
gattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
31334061 |
T |
|
| Q |
460 |
caactgcaccctcttcttcattcttacccattctacaacttcccatttgatg |
511 |
Q |
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|||| ||||| || | ||||||| |||||||||||||| ||||||||||| |
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| T |
31334060 |
caacagcaccttccttttcattcactcccattctacaactccccatttgatg |
31334009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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