View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_38 (Length: 248)
Name: NF9753_high_38
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2607204 - 2607297
Alignment:
| Q |
1 |
acatacatataagactgtttgagaaaactcatatcaacagcttctaacatgtccgtaaactattttttgcttatctacatagtttatgtataaa |
94 |
Q |
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| T |
2607204 |
acatacatataagactgtttgagaaaactcatatcaacagcttctaacatgtccgtaaactattttttgcttatctacatagtttatgtataaa |
2607297 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 2607335 - 2607395
Alignment:
| Q |
170 |
cataaatatcaatatcacacacttttttacaatattttcagtgctgctgttaattctgata |
230 |
Q |
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| T |
2607335 |
cataaatatcaatatcacacacttttttacaatattttcagtgctgctgttaattctgata |
2607395 |
T |
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