View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_high_42 (Length: 240)

Name: NF9753_high_42
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_high_42
NF9753_high_42
[»] chr7 (7 HSPs)
chr7 (1-223)||(39110916-39111138)
chr7 (1-131)||(1284465-1284597)
chr7 (7-131)||(28030931-28031057)
chr7 (14-137)||(40417836-40417963)
chr7 (72-131)||(32525253-32525312)
chr7 (4-70)||(38259116-38259183)
chr7 (14-78)||(30064503-30064568)
[»] chr8 (10 HSPs)
chr8 (1-126)||(14707236-14707365)
chr8 (33-131)||(39856121-39856221)
chr8 (16-132)||(12734898-12735018)
chr8 (48-130)||(7535778-7535861)
chr8 (37-132)||(38958438-38958535)
chr8 (79-127)||(25018499-25018547)
chr8 (48-131)||(32752503-32752587)
chr8 (28-126)||(36885381-36885481)
chr8 (16-123)||(40517322-40517433)
chr8 (33-131)||(43632226-43632326)
[»] chr5 (5 HSPs)
chr5 (14-130)||(6596395-6596512)
chr5 (6-131)||(21943584-21943712)
chr5 (14-131)||(19844198-19844317)
chr5 (14-127)||(35649881-35649996)
chr5 (28-102)||(20770209-20770285)
[»] chr2 (8 HSPs)
chr2 (6-131)||(44977387-44977516)
chr2 (1-52)||(42530204-42530255)
chr2 (4-132)||(39147818-39147950)
chr2 (33-131)||(27490618-27490718)
chr2 (66-101)||(4023268-4023303)
chr2 (79-132)||(30339751-30339804)
chr2 (33-135)||(7258445-7258549)
chr2 (6-138)||(34215319-34215453)
[»] chr4 (14 HSPs)
chr4 (33-131)||(39654907-39655007)
chr4 (6-78)||(35897755-35897830)
chr4 (33-131)||(42853660-42853760)
chr4 (33-131)||(50831643-50831743)
chr4 (33-129)||(21775232-21775330)
chr4 (14-63)||(24045307-24045357)
chr4 (4-131)||(41849743-41849874)
chr4 (53-126)||(17475981-17476054)
chr4 (33-131)||(336695-336795)
chr4 (28-129)||(1140687-1140791)
chr4 (33-80)||(10474052-10474100)
chr4 (28-102)||(28458294-28458370)
chr4 (81-125)||(40587101-40587144)
chr4 (66-126)||(52846122-52846182)
[»] chr6 (6 HSPs)
chr6 (33-131)||(4820450-4820550)
chr6 (33-131)||(31883191-31883291)
chr6 (14-128)||(6271412-6271527)
chr6 (53-126)||(3199064-3199137)
chr6 (66-126)||(335179-335239)
chr6 (66-126)||(31749483-31749543)
[»] chr3 (17 HSPs)
chr3 (33-131)||(55361121-55361221)
chr3 (16-129)||(35299764-35299879)
chr3 (4-131)||(3518495-3518627)
chr3 (44-130)||(30185619-30185707)
chr3 (85-131)||(4844869-4844915)
chr3 (85-131)||(4859424-4859470)
chr3 (85-131)||(4870565-4870611)
chr3 (85-131)||(4879432-4879478)
chr3 (33-126)||(35201433-35201527)
chr3 (66-131)||(48176737-48176803)
chr3 (16-127)||(11630642-11630755)
chr3 (66-123)||(26645144-26645201)
chr3 (66-130)||(34627770-34627835)
chr3 (66-126)||(3953368-3953428)
chr3 (33-131)||(5114161-5114261)
chr3 (37-127)||(12762581-12762673)
chr3 (66-126)||(21196242-21196302)
[»] chr1 (10 HSPs)
chr1 (35-133)||(51571232-51571332)
chr1 (22-138)||(26207914-26208031)
chr1 (6-102)||(47721464-47721563)
chr1 (6-102)||(47728456-47728555)
chr1 (6-123)||(25509075-25509196)
chr1 (2-131)||(48261190-48261323)
chr1 (14-131)||(50775044-50775165)
chr1 (14-132)||(19947631-19947751)
chr1 (28-126)||(50824819-50824919)
chr1 (66-126)||(50882003-50882063)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39110916 - 39111138
Alignment:
Q  1 ctttttcatattaacattatgtttttattatatctctattgctttgattttttgtcaatacttcgttttcattgtaaattatgattgtctcataaattgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  39110916 ctttttcatattaacattatgtttttattatatctctattgctttgattttttgtcaatacttcattttcattgtaaattatgattgtctcataagttgt 39111015  T
Q  101 ccttaaaataattgttcaaataacacaactcaaaatatatataagttggcattgatggtatttattggatattgttgtgttttgtcttgcggatgaagtg 200  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  39111016 cattaaaataattgttcaaataacacaactcaaaatatatacaagttggcattaatggtatttattggatattgttgtgttttgtcttggggatgaagtg 39111115  T
Q  201 gtaaactacctaaaacttacaca 223  Q
    |||||| ||||||||||||||||    
T  39111116 gtaaaccacctaaaacttacaca 39111138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 1284465 - 1284597
Alignment:
Q  1 ctttttcatattaacattatgtttttattatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaatt 98  Q
    |||||||||| | |||||||||||||| | | ||||||||||||| |||||| |||||||||  | ||||| ||  ||| |||||||||| ||| || ||    
T  1284465 ctttttcatacttacattatgtttttactttctctctattgctttaatttttgtgtcaataccactttttcttttcaaatttatgattgtatcaaaagtt 1284564  T
Q  99 gtccttaaaataattgttcaaataacacaactc 131  Q
     || | |||||  ||||||||||||||||||||    
T  1284565 atcataaaaatggttgttcaaataacacaactc 1284597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 28030931 - 28031057
Alignment:
Q  7 catattaacattatgtttttattatatctct--attgctttgattttt-tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtcct 103  Q
    |||||| |||||||||||||||| | |||||  ||| | ||  ||||| ||| ||||| || ||||| |||||||||||||||||| || ||||| || |    
T  28030931 catatttacattatgtttttattttttctctctattacattagtttttgtgttaatacctcattttctttgtaaattatgattgtccca-aaattatcat 28031029  T
Q  104 taaaataattgttcaaataacacaactc 131  Q
    | ||||| |||||||||||| |||||||    
T  28031030 tcaaatagttgttcaaataaaacaactc 28031057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 40417836 - 40417963
Alignment:
Q  14 acattatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaat 109  Q
    ||||||||||||||  || | |||||||||||||| ||||| ||||||||| ||  |||| ||||||| || || |||||||| || ||||| |  ||||    
T  40417836 acattatgtttttactttctttctctattgctttggtttttatgtcaatacctcactttctttgtaaaattttggttgtctcaaaagttgtcgtataaat 40417935  T
Q  110 aattgttcaaataacacaactcaaaata 137  Q
    |  |||||||||||||||||||| ||||    
T  40417936 agatgttcaaataacacaactcataata 40417963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 32525253 - 32525312
Alignment:
Q  72 ttgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 131  Q
    ||||||||||   ||||||||||||||||| || |||||||| | |||||||||||||||    
T  32525253 ttgtaaattacagttgtctcataaattgtcattgaaataattatccaaataacacaactc 32525312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 38259116 - 38259183
Alignment:
Q  4 tttcatattaacattatgtttttattatatctctattgctttgattttt-tgtcaatacttcgttttc 70  Q
    ||||||| |||||||||||||||| | | ||||||||| |||||||||| ||||||||| || |||||    
T  38259116 tttcatactaacattatgtttttactttctctctattgttttgatttttgtgtcaatacctctttttc 38259183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 30064503 - 30064568
Alignment:
Q  14 acattatgtttttattatatctctattgctttgatttt-ttgtcaatacttcgttttcattgtaaa 78  Q
    |||||||||||||| | | |||||||||||||||||||  ||||||||| || ||||| |||||||    
T  30064503 acattatgtttttactttctctctattgctttgattttcatgtcaatacatcattttctttgtaaa 30064568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 14707365 - 14707236
Alignment:
Q  1 ctttttcatattaacattatgtttttattatatctc--tattgctttgatttt-ttgtcaatactt-cgttttcattgtaaattatgattgtctcataaa 96  Q
    |||| ||||||| ||||||| |||||| | ||||||  ||||||||||||||| |||||||||| | | ||||| ||||||||||||||||||||||||     
T  14707365 ctttctcatatttacattatttttttactttatctccctattgctttgattttcttgtcaatacctactttttctttgtaaattatgattgtctcataag 14707266  T
Q  97 ttgtccttaaaataattgttcaaataacac 126  Q
    ||||||   ||||| |||||||||||||||    
T  14707265 ttgtccaccaaatagttgttcaaataacac 14707236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 39856121 - 39856221
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| ||||||||  |  ||||| |||| |||| |||||||||| | || || || |||||||| |||||||||||||||||||    
T  39856121 tctctattgctttgatttttgtgtcaatatctatttttctttgttaattcatgattgtcttaaaagttatcattaaaatagttgttcaaataacacaact 39856220  T
Q  131 c 131  Q
    |    
T  39856221 c 39856221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 12735018 - 12734898
Alignment:
Q  16 attatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaattatga-ttgtctcataaattgtccttaaaataa 111  Q
    ||||||||||||  |||| ||| |||| ||||||||||| ||||||||| |  ||||||||||||||| | | ||||| |||||||| || |  |||| |    
T  12735018 attatgtttttaccttatctctatattactttgatttttgtgtcaatacctacttttcattgtaaatttttagttgtcacataaattatcatacaaatta 12734919  T
Q  112 ttgttcaaataacacaactca 132  Q
    |||||||||||||||| ||||    
T  12734918 ttgttcaaataacacatctca 12734898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 7535778 - 7535861
Alignment:
Q  48 ttttttgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||| ||| ||||| || ||||| ||||||||| ||||||||| ||||||||||| || |||| ||| || |||||||||||||    
T  7535778 ttttgtgttaatacctcattttctttgtaaatttatgattgtcccataaattgtcattcaaattattatttaaataacacaact 7535861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 38958535 - 38958438
Alignment:
Q  37 tattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaactca 132  Q
    |||||||||| ||||| |||  |||| || ||||| ||||||||| ||| ||||  || |||||||| ||||||| |||||||||||||||| |||||    
T  38958535 tattgctttggtttttgtgttcatacctcattttctttgtaaattgatggttgttccaaaaattgtcattaaaatgattgttcaaataacacgactca 38958438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 25018499 - 25018547
Alignment:
Q  79 ttatgattgtctcataaattgtccttaaaataattgttcaaataacaca 127  Q
    |||||||||||  |||||||||| |  ||||||||||||||||||||||    
T  25018499 ttatgattgtcatataaattgtcttacaaataattgttcaaataacaca 25018547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 32752503 - 32752587
Alignment:
Q  48 ttttttgtcaatacttcgttttcattgtaaatta-tgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 131  Q
    |||| ||||||| | || ||||| |||||||| | |||||||| |||||||| || || ||||  ||||||||||||||||||||    
T  32752503 ttttgtgtcaattcctcattttctttgtaaatcaatgattgtcccataaattatcattgaaatggttgttcaaataacacaactc 32752587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 36885481 - 36885381
Alignment:
Q  28 ttatatctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataaca 125  Q
    |||| ||| |||||||||||||||  ||||||||| | | ||||| |||||||||||| ||||| ||||| ||||||   ||||  ||||||||||||||    
T  36885481 ttatctctttattgctttgattttcgtgtcaatacctactttttctttgtaaattatggttgtcccataagttgtccaccaaatggttgttcaaataaca 36885382  T
Q  126 c 126  Q
    |    
T  36885381 c 36885381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 40517322 - 40517433
Alignment:
Q  16 attatgtttttattatatct--ctattgctttgatttt-ttgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataa 111  Q
    |||||||||||||| |||||  ||||||||||||||||  ||||||||  |  ||||| ||||||| ||||| |||||| ||||  |||| | ||||| |    
T  40517322 attatgtttttattttatctttctattgctttgattttcgtgtcaatatctacttttctttgtaaatttatggttgtcttataagatgtcataaaaatga 40517421  T
Q  112 ttgttcaaataa 123  Q
    ||||||||||||    
T  40517422 ttgttcaaataa 40517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 43632326 - 43632226
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaat-tatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||| ||||| ||||||||| || ||||  |||||||| ||||||||| ||| || ||||| | |||||| ||||| | ||||| |||||    
T  43632326 tctctattgctttggtttttgtgtcaatacctcattttatttgtaaatctatgattgtatcaaaagttgtcataaaaatagttgtttagataacccaact 43632227  T
Q  131 c 131  Q
    |    
T  43632226 c 43632226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 6596395 - 6596512
Alignment:
Q  14 acattatgtttttattatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataat 112  Q
    |||||||||||||| | | |||||||||||||| ||||| ||| ||||| || ||||| ||||||||||||||| || ||||||||||  || ||||  |    
T  6596395 acattatgtttttactttctctctattgctttggtttttgtgttaatacctcattttctttgtaaattatgattatcccataaattgtaattgaaatggt 6596494  T
Q  113 tgttcaaataacacaact 130  Q
     |||||||||||||||||    
T  6596495 cgttcaaataacacaact 6596512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 21943712 - 21943584
Alignment:
Q  6 tcatattaacattatgtttttattatatctct--attgctttgattttt-tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtcc 102  Q
    ||||||| |||||||||||||||| | |||||  ||||||||||||||| ||||||||  |  ||||| |||||||||||| |||||   ||| |||||     
T  21943712 tcatattcacattatgtttttattttctctctttattgctttgatttttctgtcaatatcttattttctttgtaaattatggttgtcatgtaagttgtca 21943613  T
Q  103 ttaaaataattgttcaaataacacaactc 131  Q
    |||||||| ||||| ||||||||||||||    
T  21943612 ttaaaatagttgtttaaataacacaactc 21943584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 19844317 - 19844198
Alignment:
Q  14 acattatgtttttattatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataa 111  Q
    |||||||||||||| | | |||||||||||||| ||| | || |||||| || ||||| ||||||| ||||| |||||| | ||||| ||  | |||||     
T  19844317 acattatgtttttactttctctctattgctttggtttgtgtgccaatacctctttttctttgtaaaattatggttgtcttaaaaattatcaatcaaatat 19844218  T
Q  112 ttgttcaaataacacaactc 131  Q
    ||||||||||||||||||||    
T  19844217 ttgttcaaataacacaactc 19844198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 35649996 - 35649881
Alignment:
Q  14 acattatgttttta--ttatatctctattgctttgattttttgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataa 111  Q
    ||||||||||||||  || | |||||||||| || ||||| ||||||||  |  ||| | || |||||||||| |||  ||||||||||| || |||| |    
T  35649996 acattatgtttttactttctctctctattgcattaattttgtgtcaatatcttatttcctttataaattatgactgttccataaattgtcattgaaatga 35649897  T
Q  112 ttgttcaaataacaca 127  Q
    ||||||||||||||||    
T  35649896 ttgttcaaataacaca 35649881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 20770209 - 20770285
Alignment:
Q  28 ttatatctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtcc 102  Q
    |||| |||||||||||||||||||  ||||||||| | | ||||| |||||||||||||||||| | ||| ||||||    
T  20770209 ttatctctctattgctttgattttcgtgtcaatacctactttttctttgtaaattatgattgtcccttaagttgtcc 20770285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 44977516 - 44977387
Alignment:
Q  6 tcatattaacattatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtc 101  Q
    ||||||| ||||||||||||||  || | |||||||||||||| ||||| |||||||||  | ||||| ||||||||| ||| ||||||||||| || ||    
T  44977516 tcatatttacattatgtttttactttctctctctattgctttggtttttgtgtcaataccccattttctttgtaaatttatggttgtctcataagttttc 44977417  T
Q  102 cttaaaataattgttcaaataacacaactc 131  Q
     || ||||  ||||||||||||||||||||    
T  44977416 gttcaaatggttgttcaaataacacaactc 44977387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 42530255 - 42530204
Alignment:
Q  1 ctttttcatattaacattatgtttttattatatctctattgctttgattttt 52  Q
    |||||||||||| |||||||||||||| | ||||||||||||||||||||||    
T  42530255 ctttttcatattcacattatgtttttactctatctctattgctttgattttt 42530204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 39147818 - 39147950
Alignment:
Q  4 tttcatattaacattatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattg 99  Q
    ||||||||| ||||||||||||||  || | | | ||||| |||||||||| ||||||||| || ||||  ||||||| ||||||||||| || || |||    
T  39147818 tttcatattcacattatgtttttactttctctttgtattgttttgatttttgtgtcaatacctcattttttttgtaaatttatgattgtcccaaaagttg 39147917  T
Q  100 tccttaaaataattgttcaaataacacaactca 132  Q
    || |||||||  |||||||||||||||| ||||    
T  39147918 tcattaaaatggttgttcaaataacacatctca 39147950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 27490718 - 27490618
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| ||| ||||| || ||||| ||||||| || |||||||| || || ||||| | |||||   ||||||||||||||||||    
T  27490718 tctctattgctttgatttttgtgttaatacatcattttctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacacaact 27490619  T
Q  131 c 131  Q
    |    
T  27490618 c 27490618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 4023303 - 4023268
Alignment:
Q  66 ttttcattgtaaattatgattgtctcataaattgtc 101  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4023303 ttttctttgtaaattatgattgtctcataaattgtc 4023268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 30339804 - 30339751
Alignment:
Q  79 ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactca 132  Q
    ||||||||||||||||| || || || ||||  |||||||||||||||||||||    
T  30339804 ttatgattgtctcataagttctcatttaaatggttgttcaaataacacaactca 30339751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 135
Target Start/End: Complemental strand, 7258549 - 7258445
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| |||||| || || ||||| || |||| ||||  ||||| || |||||||   | ||||  |||||||||||||||||||    
T  7258549 tctctattgctttgatttttatgtcaagacctctttttctttataaaattatagttgtcccaaaaattgttaatcaaatggttgttcaaataacacaact 7258450  T
Q  131 caaaa 135  Q
    |||||    
T  7258449 caaaa 7258445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 34215319 - 34215453
Alignment:
Q  6 tcatattaacattatgttttta--ttatatctctattgct-ttgattttttgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtcc 102  Q
    ||||||| ||||||||||||||  || | | ||||||||| | | |||| |||||||||||| || || || ||||| ||| ||||| || || || ||     
T  34215319 tcatattcacattatgtttttactttttctttctattgctatagtttttgtgtcaatacttcattgtctttataaataatggttgtc-caaaagttatca 34215417  T
Q  103 ttaaaataattgttcaaataacacaactcaaaatat 138  Q
    || |||| |||||||||||||||||||| |||||||    
T  34215418 ttgaaatgattgttcaaataacacaactaaaaatat 34215453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 39654907 - 39655007
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| ||||||||| || ||||| ||||||||| ||| |||||| | ||||| || |  ||||| |||||||||||||||||||    
T  39654907 tctctattgctttgatttttgtgtcaatacctcattttctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaact 39655006  T
Q  131 c 131  Q
    |    
T  39655007 c 39655007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 35897755 - 35897830
Alignment:
Q  6 tcatattaacattatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa 78  Q
    ||||||| | ||||||||||||  || ||| |||||||||||||||||| |||||||||||| |||||||||||||    
T  35897755 tcatattcatattatgtttttactttttatttctattgctttgatttttgtgtcaatacttcattttcattgtaaa 35897830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 42853660 - 42853760
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||| ||||| ||||||||| || ||||| || |||| || ||||||||||| ||||||||  | ||||   ||||||||||||||||||    
T  42853660 tctctattgctttggtttttgtgtcaatacctcattttctttataaaattttgattgtctcaaaaattgtcactcaaatggatgttcaaataacacaact 42853759  T
Q  131 c 131  Q
    |    
T  42853760 c 42853760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 50831743 - 50831643
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| |||||| || || ||||| ||||||| ||||| ||||| || || |||||  | ||||  |||||||||||||||||||    
T  50831743 tctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaact 50831644  T
Q  131 c 131  Q
    |    
T  50831643 c 50831643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 21775330 - 21775232
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaac 129  Q
    |||||||||||||| ||| | |||||||| ||| ||||| || |||||| ||||||||| || |||||||| |  |||||||| ||| |||||||||||    
T  21775330 tctctattgctttggtttctgtgtcaatatttcattttccttataaatttatgattgtcacaaaaattgtcatccaaataattattctaataacacaac 21775232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 24045307 - 24045357
Alignment:
Q  14 acattatgtttttattatatctctattgctttgattttt-tgtcaatactt 63  Q
    |||||||||||||| | | |||||||||||||||||||| |||||||||||    
T  24045307 acattatgtttttactttctctctattgctttgatttttgtgtcaatactt 24045357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 41849743 - 41849874
Alignment:
Q  4 tttcatattaacattatgtttttattatat--ctctattgctttgattttt--tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaatt 98  Q
    ||||||| | |||||||||||||| | | |  ||||||||||||| |||||  |||||||| ||| ||||| ||||||| ||||||||||   | |||||    
T  41849743 tttcatactcacattatgtttttactttcttcctctattgctttggttttttgtgtcaatatttctttttctttgtaaatttatgattgt-aaaaaaatt 41849841  T
Q  99 gtccttaaaataattgttcaaataacacaactc 131  Q
    ||| |||||||  |||||||||| |||||||||    
T  41849842 gtcattaaaatggttgttcaaatcacacaactc 41849874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 17475981 - 17476054
Alignment:
Q  53 tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    |||||||||| | ||||| ||||||||||||||||||  |||| |||||   ||| | ||||||||||||||||    
T  17475981 tgtcaatactactttttctttgtaaattatgattgtcaaataagttgtcaccaaattgattgttcaaataacac 17476054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 336795 - 336695
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatta-tgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| || ||||||  | ||||| ||| |||||| || |||| ||| || ||||| | |||| | |||||||||||||||||||    
T  336795 tctctattgctttgatttttgtgccaataccactttttctttgcaaattaatggttgtatcaaaagttgtcataaaaaaagttgttcaaataacacaact 336696  T
Q  131 c 131  Q
    |    
T  336695 c 336695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 1140687 - 1140791
Alignment:
Q  28 ttatatctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaat-tatgattgtctcataaattgtccttaaaataattgttcaaataac 124  Q
    |||| ||||||||| |||| ||||  ||||||||||| | ||||| |||||||| |||| ||||| ||||| |||    |||||||||||||||||||||    
T  1140687 ttatttctctattgttttggttttcgtgtcaatacttactttttctttgtaaatctatggttgtcacataagttgcgaataaaataattgttcaaataac 1140786  T
Q  125 acaac 129  Q
    |||||    
T  1140787 acaac 1140791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 10474100 - 10474052
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt 80  Q
    |||||||| ||||||||||| |||||||||||| ||||| |||||||||    
T  10474100 tctctattactttgatttttgtgtcaatacttctttttctttgtaaatt 10474052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 28458370 - 28458294
Alignment:
Q  28 ttatatctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtcc 102  Q
    |||| |||||||||||||||||||  ||||||||| | | ||||| |||||||||||||||||| | ||| ||||||    
T  28458370 ttatctctctattgctttgattttcgtgtcaatacctactttttctttgtaaattatgattgtcccttaagttgtcc 28458294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 40587101 - 40587144
Alignment:
Q  81 atgattgtctcataaattgtccttaaaataattgttcaaataaca 125  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||    
T  40587101 atgattgtctcataagttgtc-ttaaaatgattgttcaaataaca 40587144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 52846182 - 52846122
Alignment:
Q  66 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    ||||| ||||||||||||||||||  | ||||||||  | ||||| |||||||||||||||    
T  52846182 ttttctttgtaaattatgattgtcctaaaaattgtcaatcaaatagttgttcaaataacac 52846122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 4820450 - 4820550
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| ||||||| | || ||||| ||||||| || ||||||||||| || || || |  ||||| |||||||||||||||||||    
T  4820450 tctctattgctttgatttttgtgtcaatgcctcattttctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaact 4820549  T
Q  131 c 131  Q
    |    
T  4820550 c 4820550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 31883291 - 31883191
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| |||||| || || ||||| ||||||| ||||| ||||| || ||||||||  | ||||| |||||||||||| ||||||    
T  31883291 tctctattgctttgatttttgtgtcaagacctctttttctttgtaaaattatggttgtcccaaaaattgtcaatcaaatagttgttcaaataatacaact 31883192  T
Q  131 c 131  Q
    |    
T  31883191 c 31883191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 6271412 - 6271527
Alignment:
Q  14 acattatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaata 110  Q
    ||||||||||||||  || | ||||||||| |||| ||||| ||||||||  || ||||| |||||||||||||| || ||| || ||||| |||||||     
T  6271412 acattatgtttttactttctctctctattgttttggtttttgtgtcaata--tctttttctttgtaaattatgatcgtatcaaaagttgtcattaaaatg 6271509  T
Q  111 attgttcaaataacacaa 128  Q
     |||||||||||||||||    
T  6271510 gttgttcaaataacacaa 6271527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 3199064 - 3199137
Alignment:
Q  53 tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    |||||||||| | ||||| || |||||||||||||||  ||||||| || | ||| || |||||||||||||||    
T  3199064 tgtcaatactactttttctttataaattatgattgtcaaataaattatcatcaaattagttgttcaaataacac 3199137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 335179 - 335239
Alignment:
Q  66 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    ||||| ||||||||||||||||||  |||| |||||  |||| | ||||||||||||||||    
T  335179 ttttctttgtaaattatgattgtcaaataagttgtcactaaattgattgttcaaataacac 335239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 31749483 - 31749543
Alignment:
Q  66 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    ||||| |||||||||||| ||||||| ||| |||||  | |||| ||||||||||||||||    
T  31749483 ttttctttgtaaattatggttgtctcttaagttgtcaatcaaatgattgttcaaataacac 31749543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 55361221 - 55361121
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaat-tatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||| ||||| |||||||||||| ||||| ||||||||  ||| ||||| ||||| || || || ||||| |||||||||||| ||||||    
T  55361221 tctctattgctttggtttttgtgtcaatacttcattttctttgtaaatcaatggttgtcacataagttttcattcaaatagttgttcaaataaaacaact 55361122  T
Q  131 c 131  Q
    |    
T  55361121 c 55361121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 35299879 - 35299764
Alignment:
Q  16 attatgtttttattatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataatt 113  Q
    ||||| |||||||| | |||||||||||||||||||| ||||||||| || ||||| || |||||| ||  |||||  | |||||||| |||||||  ||    
T  35299879 attatatttttattttctctctattgctttgatttttgtgtcaatacctcattttctttataaattcattgttgtcctaaaaattgtcattaaaatgctt 35299780  T
Q  114 gttcaaataacacaac 129  Q
    ||| ||||||||||||    
T  35299779 gttgaaataacacaac 35299764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 3518627 - 3518495
Alignment:
Q  4 tttcatattaacattatgtttttattatatct---ctattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaatt 98  Q
    ||||||||| |||||| ||||||||| |||||   ||||||||||||||||| ||||||||| |  ||||| ||  ||||| |||||| ||  | |||||    
T  3518627 tttcatattcacattacgtttttattttatcttctctattgctttgatttttgtgtcaataccttattttctttacaaatttatgattatcctaaaaatt 3518528  T
Q  99 gtccttaaaataattgttcaaataacacaactc 131  Q
    ||| |||||||  |||||||||||| |||||||    
T  3518527 gtcgttaaaatggttgttcaaataaaacaactc 3518495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 30185619 - 30185707
Alignment:
Q  44 ttgattttt-tgtcaatacttcgttttcattgtaaatta-tgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    ||||||||| ||||||| | || ||||| |||||||| | | |||||||||||||||||| || ||||  |||||||||||||||||||    
T  30185619 ttgatttttgtgtcaattcctcattttctttgtaaatcaataattgtctcataaattgtctttgaaatggttgttcaaataacacaact 30185707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 4844869 - 4844915
Alignment:
Q  85 ttgtctcataaattgtccttaaaataattgttcaaataacacaactc 131  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  4844869 ttgtctcataaattatcgttaaaattgttgttcaaataacacaactc 4844915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 4859424 - 4859470
Alignment:
Q  85 ttgtctcataaattgtccttaaaataattgttcaaataacacaactc 131  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  4859424 ttgtctcataaattatcgttaaaattgttgttcaaataacacaactc 4859470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 4870565 - 4870611
Alignment:
Q  85 ttgtctcataaattgtccttaaaataattgttcaaataacacaactc 131  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  4870565 ttgtctcataaattatcgttaaaattgttgttcaaataacacaactc 4870611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 4879432 - 4879478
Alignment:
Q  85 ttgtctcataaattgtccttaaaataattgttcaaataacacaactc 131  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||    
T  4879432 ttgtctcataaattatcgttaaaattgttgttcaaataacacaactc 4879478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 35201527 - 35201433
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    ||||||||||| || ||||  |||||||||| | ||||| ||||||||||||||||||  |||| |||||   ||| | ||||||||||||||||    
T  35201527 tctctattgctatggttttcgtgtcaatactactttttctttgtaaattatgattgtcaaataagttgtcaccaaattgattgttcaaataacac 35201433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 48176803 - 48176737
Alignment:
Q  66 ttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaactc 131  Q
    |||| |||||||||| ||||||||| |||||||| |  |  ||||||||||||||||||||||||||    
T  48176803 tttttattgtaaatttatgattgtcgcataaattattatccaaataattgttcaaataacacaactc 48176737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 11630755 - 11630642
Alignment:
Q  16 attatgtttttattatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataatt 113  Q
    ||||| |||||| | | |||||||| ||||| ||||| | |||||||||| ||||| ||||||| || | ||||||||| |||||||| |  |||| | |    
T  11630755 attatatttttactttctctctattactttggtttttatatcaatacttcattttctttgtaaaattttaattgtctcaaaaattgtcatataaatgaat 11630656  T
Q  114 gttcaaataacaca 127  Q
    ||||||||||||||    
T  11630655 gttcaaataacaca 11630642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 26645144 - 26645201
Alignment:
Q  66 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataa 123  Q
    ||||| ||||||||||||||| || ||||||||||| |  ||||| ||||||||||||    
T  26645144 ttttctttgtaaattatgattatcccataaattgtcatccaaatagttgttcaaataa 26645201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 34627835 - 34627770
Alignment:
Q  66 ttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    ||||| ||||||||| ||| |||||| |||| || || | ||||||||||||||||||||||||||    
T  34627835 ttttctttgtaaatttatggttgtcttataagttatcataaaaataattgttcaaataacacaact 34627770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 3953428 - 3953368
Alignment:
Q  66 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    ||||| || |||||||||||||||||| ||||||||    |||| ||||||||||||||||    
T  3953428 ttttctttataaattatgattgtctcaaaaattgtcaaccaaatgattgttcaaataacac 3953368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 5114161 - 5114261
Alignment:
Q  33 tctctattgctttgattttt-tgtcaatacttcgttttcattgt-aaattatgattgtctcataaattgtccttaaaataattgttcaaataacacaact 130  Q
    |||||||||||||||||||| ||||| ||| || ||||| |||| ||||| ||||||||  | ||||||||    |||||  ||||||||||||||||||    
T  5114161 tctctattgctttgatttttgtgtcactacctcattttctttgtaaaattttgattgtcataaaaattgtcacataaatagatgttcaaataacacaact 5114260  T
Q  131 c 131  Q
    |    
T  5114261 c 5114261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 12762673 - 12762581
Alignment:
Q  37 tattgctttgattttt-tgtcaatacttcgttttcattgtaaatt-atgattgtctcataaattgtccttaaaataattgttcaaataacaca 127  Q
    |||| ||||||||||| ||||||||  |  ||||| ||||||||| ||| ||||| ||||||||||| |  |||| |||||||||||||||||    
T  12762673 tattactttgatttttgtgtcaataactatttttctttgtaaatttatggttgtcccataaattgtcatgtaaatgattgttcaaataacaca 12762581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 21196242 - 21196302
Alignment:
Q  66 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    ||||| ||||||||||||||| || |||||||||||  | ||||  |||||||||||||||    
T  21196242 ttttctttgtaaattatgattatcccataaattgtcaatcaaatggttgttcaaataacac 21196302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 51571332 - 51571232
Alignment:
Q  35 tctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataattgttcaaataacacaactca 132  Q
    |||||||||||| ||||| ||||||||| || ||||| ||||||| ||||| ||||| || ||||||||  | ||||  |||||||||||||||||||||    
T  51571332 tctattgctttggtttttgtgtcaatacctctttttctttgtaaaattatggttgtcccaaaaattgtcaatcaaatggttgttcaaataacacaactca 51571233  T
Q  133 a 133  Q
    |    
T  51571232 a 51571232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 26207914 - 26208031
Alignment:
Q  22 tttttattatatctctattgctttgattttttgtcaatacttcgttttcattg-taaattatgattgtctcataaattgtccttaaaataattgttcaaa 120  Q
    |||||||| | ||||||||||||||||||| ||||||||| || ||||| |||  ||||| ||||| || || || || |  |  |||||  ||||||||    
T  26207914 tttttattttctctctattgctttgattttatgtcaatacatcattttctttgcaaaattttgattatcacaaaagttataatctaaatagatgttcaaa 26208013  T
Q  121 taacacaactcaaaatat 138  Q
    ||||||||||||||||||    
T  26208014 taacacaactcaaaatat 26208031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 47721464 - 47721563
Alignment:
Q  6 tcatattaacattatgttttta--ttatatctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtc 101  Q
    ||||||| ||||||| ||||||  |||| |||||||||||||||||||  ||||||||||| | ||||| |||||||||||| ||||| ||||| |||||    
T  47721464 tcatattcacattat-tttttactttatctctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtcccataagttgtc 47721562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 47728456 - 47728555
Alignment:
Q  6 tcatattaacattatgttttta--ttatatctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtc 101  Q
    ||||||| ||||||| ||||||  |||| |||||||||||||||||||  ||||||||||| | ||||| |||||||||||| ||||| ||||| |||||    
T  47728456 tcatattcacattat-tttttactttatctctctattgctttgattttcgtgtcaatacttactttttctttgtaaattatggttgtcccataagttgtc 47728554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 25509196 - 25509075
Alignment:
Q  6 tcatattaacattatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaat-tatgattgtctcataaattgtc 101  Q
    ||||||| | ||||||||||||  || | | ||||||| |||| ||||| ||||||||| || ||||| ||||| ||  |||||||||| |||| |||||    
T  25509196 tcatattcatattatgtttttattttctttttctattgttttggtttttgtgtcaatacctcattttctttgtatatcaatgattgtctaataagttgtc 25509097  T
Q  102 cttaaaataattgttcaaataa 123  Q
     ||||||| |||||||||||||    
T  25509096 attaaaatgattgttcaaataa 25509075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 48261190 - 48261323
Alignment:
Q  2 tttttcatattaacattatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaat-tatgattgtctcataaat 97  Q
    ||||||||| | ||||||||||||||  || | |||||||||||||| ||||| || |||||| || ||| | |||||||  ||||||||||||| || |    
T  48261190 tttttcatactcacattatgtttttactttctctctctattgctttggtttttgtgccaatacctcttttcctttgtaaaaatatgattgtctcaaaagt 48261289  T
Q  98 tgtccttaaaataattgttcaaataacacaactc 131  Q
    ||||  | |||||  | |||||||||||||||||    
T  48261290 tgtctatcaaataggtattcaaataacacaactc 48261323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 50775165 - 50775044
Alignment:
Q  14 acattatgttttta--ttatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaat 109  Q
    ||||||||||||||  |||| |||||||||||||| ||||| |||||| || || ||||| ||||||| ||||| ||||| || || |||||  | ||||    
T  50775165 acattatgtttttactttatctctctattgctttggtttttgtgtcaacacatctttttctttgtaaaattatggttgtcacaaaatttgtcaatcaaat 50775066  T
Q  110 aattgttcaaataacacaactc 131  Q
      | ||||||||||||||||||    
T  50775065 ggtcgttcaaataacacaactc 50775044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 19947751 - 19947631
Alignment:
Q  14 acattatgtttttattatatctctattgctttgattttt-tgtcaatacttcgttttcattgtaaa-ttatgattgtctcataaattgtccttaaaataa 111  Q
    |||||||| ||||| | | |||||||||||||| ||||| |  |||||| || ||||| || |||| || || |||||||| || ||||| |  ||||||    
T  19947751 acattatgcttttactttctctctattgctttggtttttgtcccaatacctccttttctttataaaattttggttgtctcaaaagttgtcatataaataa 19947652  T
Q  112 ttgttcaaataacacaactca 132  Q
     ||||||||||||||||||||    
T  19947651 atgttcaaataacacaactca 19947631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 50824819 - 50824919
Alignment:
Q  28 ttatatctctattgctttgattttt-tgtcaatactt-cgttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataaca 125  Q
    |||| |||||||||||||| ||||  ||||||||| | | ||||| |||||||||||| |||| |||||| ||||||   ||||  ||||||||||||||    
T  50824819 ttatctctctattgctttggttttcatgtcaatacctactttttctttgtaaattatggttgtatcataagttgtccaccaaatggttgttcaaataaca 50824918  T
Q  126 c 126  Q
    |    
T  50824919 c 50824919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 50882063 - 50882003
Alignment:
Q  66 ttttcattgtaaattatgattgtctcataaattgtccttaaaataattgttcaaataacac 126  Q
    ||||| || ||||||||||||||| |||||||||||  | ||||  |||||||||||||||    
T  50882063 ttttctttataaattatgattgtcacataaattgtcaatcaaatggttgttcaaataacac 50882003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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