View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9753_high_46 (Length: 234)

Name: NF9753_high_46
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9753_high_46
NF9753_high_46
[»] chr1 (33 HSPs)
chr1 (9-201)||(37189565-37189757)
chr1 (73-201)||(10824586-10824714)
chr1 (73-201)||(18844461-18844589)
chr1 (73-234)||(22683143-22683305)
chr1 (73-188)||(37189370-37189484)
chr1 (73-187)||(15825752-15825864)
chr1 (73-201)||(19056152-19056280)
chr1 (73-188)||(18844678-18844794)
chr1 (73-201)||(19056368-19056496)
chr1 (83-199)||(10824380-10824496)
chr1 (9-69)||(48392417-48392477)
chr1 (114-201)||(22683358-22683445)
chr1 (9-69)||(3346843-3346903)
chr1 (9-69)||(10156027-10156087)
chr1 (9-69)||(30745401-30745461)
chr1 (9-69)||(30766852-30766912)
chr1 (137-188)||(22683290-22683341)
chr1 (10-69)||(38859908-38859967)
chr1 (11-69)||(23908342-23908400)
chr1 (12-69)||(42456629-42456686)
chr1 (9-69)||(7742790-7742850)
chr1 (9-69)||(47022759-47022819)
chr1 (9-69)||(49902525-49902585)
chr1 (11-69)||(13131953-13132011)
chr1 (11-69)||(29149561-29149619)
chr1 (11-69)||(44462491-44462549)
chr1 (9-69)||(5558366-5558425)
chr1 (9-69)||(10907659-10907719)
chr1 (10-69)||(5975045-5975104)
chr1 (137-188)||(10824516-10824567)
chr1 (137-188)||(19056297-19056348)
chr1 (9-48)||(42517305-42517344)
chr1 (9-69)||(26835395-26835455)
[»] chr8 (27 HSPs)
chr8 (73-201)||(13884491-13884619)
chr8 (73-200)||(13884706-13884833)
chr8 (67-201)||(42126378-42126512)
chr8 (73-233)||(29714544-29714705)
chr8 (67-201)||(11867899-11868032)
chr8 (80-201)||(2554067-2554188)
chr8 (81-183)||(29714777-29714879)
chr8 (73-201)||(42126601-42126729)
chr8 (9-69)||(16591386-16591446)
chr8 (9-69)||(21525415-21525475)
chr8 (9-69)||(35806851-35806911)
chr8 (9-69)||(42072485-42072545)
chr8 (10-62)||(16523170-16523222)
chr8 (117-199)||(14996678-14996761)
chr8 (11-69)||(22324653-22324711)
chr8 (9-62)||(26021460-26021513)
chr8 (140-188)||(2554002-2554050)
chr8 (9-69)||(24065330-24065390)
chr8 (9-69)||(33934380-33934440)
chr8 (9-69)||(42013929-42013989)
chr8 (137-188)||(14996608-14996659)
chr8 (73-168)||(43416265-43416360)
chr8 (9-62)||(16818984-16819037)
chr8 (9-69)||(19334840-19334900)
chr8 (137-188)||(29714691-29714742)
chr8 (89-165)||(26745991-26746067)
chr8 (10-62)||(43282863-43282915)
[»] chr3 (34 HSPs)
chr3 (70-234)||(46003431-46003596)
chr3 (73-201)||(40244627-40244756)
chr3 (73-201)||(51663467-51663595)
chr3 (73-201)||(51663252-51663380)
chr3 (75-201)||(20537930-20538056)
chr3 (74-182)||(40364194-40364301)
chr3 (73-201)||(20538151-20538279)
chr3 (74-201)||(46003251-46003378)
chr3 (73-201)||(40364043-40364171)
chr3 (10-69)||(3178760-3178819)
chr3 (10-69)||(13856156-13856215)
chr3 (9-69)||(10839391-10839451)
chr3 (73-133)||(40244873-40244933)
chr3 (10-69)||(5391514-5391573)
chr3 (11-69)||(19649385-19649443)
chr3 (9-70)||(6280370-6280431)
chr3 (9-69)||(8950515-8950575)
chr3 (9-69)||(21853254-21853314)
chr3 (11-62)||(20382583-20382634)
chr3 (137-188)||(46003395-46003446)
chr3 (9-69)||(1781819-1781879)
chr3 (9-69)||(36539689-36539749)
chr3 (9-69)||(40845928-40845988)
chr3 (9-69)||(54546961-54547021)
chr3 (11-69)||(19644340-19644398)
chr3 (11-69)||(23467507-23467565)
chr3 (9-62)||(27642724-27642777)
chr3 (9-69)||(44994979-44995040)
chr3 (9-69)||(32352904-32352964)
chr3 (9-69)||(39352251-39352310)
chr3 (9-69)||(43347347-43347407)
chr3 (137-183)||(20538076-20538122)
chr3 (9-70)||(33103799-33103860)
chr3 (29-69)||(47889783-47889823)
[»] chr2 (30 HSPs)
chr2 (73-234)||(2916380-2916541)
chr2 (73-234)||(16973066-16973228)
chr2 (73-201)||(44594455-44594583)
chr2 (74-234)||(38982740-38982901)
chr2 (73-201)||(16973281-16973409)
chr2 (73-201)||(40987659-40987787)
chr2 (73-188)||(44594250-44594366)
chr2 (73-188)||(38982559-38982674)
chr2 (73-188)||(11533674-11533790)
chr2 (74-201)||(2916594-2916721)
chr2 (96-234)||(24126113-24126245)
chr2 (73-201)||(13559519-13559646)
chr2 (10-69)||(6318470-6318529)
chr2 (96-201)||(24125876-24125975)
chr2 (9-69)||(29846499-29846559)
chr2 (77-165)||(40987899-40987987)
chr2 (73-138)||(24125672-24125737)
chr2 (9-69)||(14942055-14942115)
chr2 (9-69)||(40277299-40277359)
chr2 (9-69)||(41674717-41674777)
chr2 (9-69)||(42769769-42769829)
chr2 (137-188)||(16973213-16973264)
chr2 (10-69)||(33009730-33009789)
chr2 (11-69)||(2888098-2888156)
chr2 (11-69)||(14186451-14186509)
chr2 (9-69)||(19181605-19181665)
chr2 (10-69)||(3956629-3956688)
chr2 (137-188)||(38982704-38982755)
chr2 (137-188)||(44594385-44594436)
chr2 (9-69)||(14539715-14539775)
[»] chr4 (34 HSPs)
chr4 (67-234)||(39161284-39161451)
chr4 (73-188)||(50509358-50509473)
chr4 (68-201)||(55173470-55173603)
chr4 (73-187)||(47096802-47096914)
chr4 (73-201)||(39161504-39161632)
chr4 (74-183)||(37996068-37996177)
chr4 (73-188)||(55173336-55173452)
chr4 (73-201)||(47097017-47097142)
chr4 (9-67)||(11054515-11054573)
chr4 (10-69)||(31377447-31377506)
chr4 (11-69)||(52632575-52632633)
chr4 (9-69)||(1535828-1535888)
chr4 (9-69)||(49284414-49284474)
chr4 (73-120)||(2623449-2623496)
chr4 (11-68)||(12792244-12792301)
chr4 (9-62)||(37801275-37801328)
chr4 (9-62)||(47084076-47084129)
chr4 (9-69)||(16338224-16338284)
chr4 (9-69)||(20818624-20818684)
chr4 (9-69)||(34241050-34241110)
chr4 (9-69)||(36012196-36012256)
chr4 (9-69)||(50328853-50328913)
chr4 (11-62)||(10094406-10094457)
chr4 (10-69)||(17888562-17888621)
chr4 (9-69)||(25954807-25954867)
chr4 (10-69)||(9742545-9742604)
chr4 (137-188)||(39161436-39161487)
chr4 (11-69)||(35322717-35322775)
chr4 (11-69)||(46583554-46583612)
chr4 (33-69)||(322584-322620)
chr4 (89-165)||(9738136-9738212)
chr4 (9-61)||(19124749-19124801)
chr4 (9-69)||(46474051-46474111)
chr4 (137-188)||(47096947-47096999)
[»] scaffold0060 (1 HSPs)
scaffold0060 (73-201)||(22922-23050)
[»] chr5 (23 HSPs)
chr5 (73-234)||(21249364-21249526)
chr5 (10-69)||(10081202-10081261)
chr5 (10-69)||(9737993-9738054)
chr5 (11-69)||(11856352-11856410)
chr5 (11-69)||(42119679-42119737)
chr5 (9-69)||(23218542-23218602)
chr5 (9-69)||(38397655-38397715)
chr5 (10-69)||(8456975-8457034)
chr5 (10-69)||(16618582-16618641)
chr5 (10-69)||(25560339-25560398)
chr5 (9-68)||(29491425-29491483)
chr5 (10-69)||(33271282-33271341)
chr5 (72-122)||(21249629-21249679)
chr5 (9-69)||(6257421-6257481)
chr5 (9-69)||(37169044-37169104)
chr5 (9-69)||(39862498-39862558)
chr5 (10-69)||(29790231-29790290)
chr5 (137-187)||(21249511-21249561)
chr5 (9-69)||(614403-614463)
chr5 (10-69)||(15631670-15631730)
chr5 (9-69)||(36769085-36769145)
chr5 (12-61)||(15475408-15475457)
chr5 (9-61)||(27916205-27916257)
[»] chr7 (29 HSPs)
chr7 (74-201)||(28715645-28715772)
chr7 (73-201)||(41985912-41986040)
chr7 (68-183)||(30862215-30862330)
chr7 (67-201)||(28715859-28715993)
chr7 (73-201)||(6474282-6474411)
chr7 (67-234)||(6474464-6474631)
chr7 (88-201)||(47373679-47373792)
chr7 (73-234)||(47373464-47373627)
chr7 (74-201)||(30862437-30862564)
chr7 (73-143)||(41986183-41986253)
chr7 (67-124)||(22226666-22226723)
chr7 (9-69)||(19334571-19334631)
chr7 (9-69)||(29981124-29981184)
chr7 (9-69)||(10576730-10576790)
chr7 (9-69)||(32876541-32876601)
chr7 (9-69)||(34259575-34259635)
chr7 (9-69)||(34707173-34707233)
chr7 (9-69)||(44164754-44164814)
chr7 (10-69)||(29555951-29556010)
chr7 (10-69)||(33057669-33057728)
chr7 (9-69)||(29238154-29238214)
chr7 (89-197)||(6271188-6271296)
chr7 (9-69)||(9770716-9770776)
chr7 (9-69)||(15017830-15017890)
chr7 (9-69)||(17303125-17303185)
chr7 (9-69)||(24320450-24320510)
chr7 (89-165)||(38408153-38408229)
chr7 (137-187)||(41986058-41986108)
chr7 (9-69)||(10334235-10334295)
[»] chr6 (22 HSPs)
chr6 (66-197)||(24798843-24798974)
chr6 (73-183)||(2216813-2216923)
chr6 (73-201)||(18494736-18494862)
chr6 (76-234)||(11643754-11643913)
chr6 (88-201)||(24798642-24798755)
chr6 (67-188)||(11643979-11644099)
chr6 (73-165)||(24690357-24690449)
chr6 (73-234)||(18494916-18495077)
chr6 (70-153)||(24690611-24690694)
chr6 (9-69)||(9231865-9231925)
chr6 (9-69)||(14309809-14309869)
chr6 (9-61)||(1727944-1727996)
chr6 (9-61)||(13627605-13627657)
chr6 (9-69)||(24694662-24694722)
chr6 (13-69)||(27863756-27863812)
chr6 (137-188)||(11643898-11643949)
chr6 (136-189)||(24798769-24798822)
chr6 (9-69)||(13103129-13103189)
chr6 (9-69)||(28750661-28750721)
chr6 (89-144)||(9955643-9955698)
chr6 (89-187)||(9954825-9954923)
chr6 (9-69)||(24497585-24497645)
[»] scaffold0781 (1 HSPs)
scaffold0781 (73-183)||(5270-5380)
[»] scaffold0086 (1 HSPs)
scaffold0086 (9-69)||(20842-20902)
[»] scaffold0045 (1 HSPs)
scaffold0045 (9-65)||(34463-34519)
[»] scaffold0079 (1 HSPs)
scaffold0079 (9-69)||(54576-54636)
[»] scaffold0034 (1 HSPs)
scaffold0034 (131-187)||(108055-108111)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 37189757 - 37189565
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatttagacttattcaatcacctggtcccttaacttaattgatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189757 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatttagacttattcaatcacctggtcccttaacttaattgatt 37189658  T
Q  109 gtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagtttctct 201  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||    
T  37189657 gtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 10824714 - 10824586
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||| |||    
T  10824714 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 10824615  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||||||||  |||||||||||    
T  10824614 tagttttagtcctttctagtagtttctct 10824586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 18844461 - 18844589
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||| |||    
T  18844461 cttattcaaccacatggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttac 18844560  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| ||||||||||||    
T  18844561 tagttttagtcatttctggtagtttctct 18844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 22683143 - 22683305
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||||||||| | |||    
T  22683143 cttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgttac 22683242  T
Q  173 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    |||||||||||||||| | ||||||||||         |||||||||||||||||||||||||    
T  22683243 tagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcc 22683305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 37189370 - 37189484
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||| || |||    
T  37189370 cttattcaatcacccggtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgttac 37189468  T
Q  173 tagttttagtcctttc 188  Q
    ||||||||||||||||    
T  37189469 tagttttagtcctttc 37189484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 15825864 - 15825752
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| |||||||||||| | ||     
T  15825864 cttattcaatcacccggtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgttat 15825767  T
Q  173 tagttttagtccttt 187  Q
    |||||||||||||||    
T  15825766 tagttttagtccttt 15825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 19056152 - 19056280
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||| | |||    
T  19056152 cttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgttac 19056251  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| | ||||||||||    
T  19056252 tagttttagtcttttctgttagtttctct 19056280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 18844794 - 18844678
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgcttcgata 171  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||  || || |||||||||||| |||||||||||  ||||||||||| || ||    
T  18844794 cttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctccgtta 18844695  T
Q  172 ctagttttagtcctttc 188  Q
    ||||||||||| |||||    
T  18844694 ctagttttagttctttc 18844678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 19056496 - 19056368
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| | ||||||||||||||||||||||| | ||||||||||| || ||||||| ||||||||||||||  | |||||||||||| | |||    
T  19056496 cttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttgttac 19056397  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| |  |||||||||    
T  19056396 tagttttagtcatttctgtcagtttctct 19056368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 199
Target Start/End: Original strand, 10824380 - 10824496
Alignment:
Q  83 cacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagt 182  Q
    |||| ||||| ||||||||||||||| |  |||||||||||| ||  ||||||||||| |||||||||||  ||||||||||| || |||||||||||||    
T  10824380 cacccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagt 10824479  T
Q  183 cctttcgggtagtttct 199  Q
    |||||| | ||||||||    
T  10824480 cctttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 48392417 - 48392477
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  48392417 gcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 48392477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 201
Target Start/End: Complemental strand, 22683445 - 22683358
Alignment:
Q  114 aatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| || || | |||||||||||||||||||  ||||||||||| || |||||||||||||||||||   ||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctct 22683358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 3346903 - 3346843
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  3346903 gcaatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 3346843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 10156027 - 10156087
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||  ||||||||||||||||||||  |||||||||||||||||||    
T  10156027 gcaatttcttgtgtaaattcctatgaatttcttatataaacttctataaattggacaattt 10156087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 30745461 - 30745401
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||||||||    
T  30745461 gcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaattt 30745401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 30766912 - 30766852
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| |||||||||| ||| |||||||||| |||||||| ||||||||||||||||||    
T  30766912 gcaattttttatgtaaatttctctgaatttcttttataaatccctataaattggacaattt 30766852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 22683290 - 22683341
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttc 22683341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 38859967 - 38859908
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  38859967 caatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 38859908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 23908400 - 23908342
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||| || |||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaattt 23908342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 42456686 - 42456629
Alignment:
Q  12 atttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  42456686 atttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 42456629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 7742790 - 7742850
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| ||||||||  ||||||||||||||||||| | ||||||||||| ||||||    
T  7742790 gcaatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaattt 7742850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 47022819 - 47022759
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||||||||||||||||||||||||   ||||||||| | ||||||    
T  47022819 gcaatttcttgtgtaaatctctatgaatttcttatataaactcctataaattaggcaattt 47022759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 49902585 - 49902525
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | |||||||| || ||||||    
T  49902585 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggcaattt 49902525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 13132011 - 13131953
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||  || | ||||| ||||||||||| ||||||||||||||||||    
T  13132011 aatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaattt 13131953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 29149561 - 29149619
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 29149619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 44462491 - 44462549
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||| |||||||||||| | ||||||||||||| ||| ||||||||||| ||||||||    
T  44462491 aattttttatgtaaatctatctgaatttcttatacaaacctctataaattagacaattt 44462549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 5558425 - 5558366
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||| || |  |||||||||||||||| | ||||||||||||||||||    
T  5558425 gcaatttcttatgtaaacct-tccgaatttcttatataaacccctataaattggacaattt 5558366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 10907659 - 10907719
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||||||||  ||||||||    
T  10907659 gcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaattt 10907719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 5975104 - 5975045
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||| |||||||| ||| |||||||||||||||| | ||||||||| | ||||||    
T  5975104 caatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaattt 5975045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 10824567 - 10824516
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    |||||||||||| |||| ||||||||||| || | |||||||||||||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttc 10824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 19056348 - 19056297
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||||| | |||||||||||| ||||||||| |||| ||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagtttaagtcttttc 19056297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 42517305 - 42517344
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaa 48  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  42517305 gcaatttcttgtgtaaatccctatgaatttcttatataaa 42517344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 26835455 - 26835395
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| ||||||||||   |||||||||||||||||||   |||||||||| |||||||    
T  26835455 gcaatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaattt 26835395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 13884491 - 13884619
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||||||||||| |||    
T  13884491 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgttac 13884590  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| ||||||||||||    
T  13884591 tagttttagtcttttctggtagtttctct 13884619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 13884833 - 13884706
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  |||||||||||||| |||    
T  13884833 cttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgttac 13884734  T
Q  173 tagttttagtcctttcgggtagtttctc 200  Q
    | |||||||||||||  | |||||||||    
T  13884733 tggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 42126378 - 42126512
Alignment:
Q  67 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 166  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| | |  || |||||||||||| |||||||| ||| ||||||||||||    
T  42126378 tttaggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgctt 42126477  T
Q  167 cgatactagttttagtcctttcgggtagtttctct 201  Q
    || ||||||||||||||||||| ||||||||||||    
T  42126478 cgctactagttttagtcctttctggtagtttctct 42126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 29714544 - 29714705
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||| ||| |||||||| | |||    
T  29714544 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgttac 29714643  T
Q  173 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtc 233  Q
    ||| |||| || |||| | ||||||||||         ||||||||||||||||||||||||    
T  29714644 tagctttaatcatttctgttagtttctctcgtaaaaacgttaacttatgtaccaatttggtc 29714705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 11868032 - 11867899
Alignment:
Q  67 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 166  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||| |||||||||||  ||||||||| ||    
T  11868032 tttaggcttattcaatcacctggtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatt 11867934  T
Q  167 cgatactagttttagtcctttcgggtagtttctct 201  Q
     |  |||||||||||||||||  | ||||||||||    
T  11867933 tgtcactagttttagtcctttatgttagtttctct 11867899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 2554188 - 2554067
Alignment:
Q  80 aatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagtttt 179  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||||||| | |||||||||||| | |||| |||||    
T  2554188 aatcacctagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgtttt 2554089  T
Q  180 agtcctttcgggtagtttctct 201  Q
    ||| ||||| | ||||||||||    
T  2554088 agttctttctgttagtttctct 2554067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 29714879 - 29714777
Alignment:
Q  81 atcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagtttta 180  Q
    |||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||| |||||||||||  |||||||||||||  |||||||||||    
T  29714879 atcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcattactagtttta 29714780  T
Q  181 gtc 183  Q
    |||    
T  29714779 gtc 29714777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 42126729 - 42126601
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| |||| || ||||||||||||||||||||||||  || ||||||||  |  ||    
T  42126729 cttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtcac 42126630  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    || |||||||| |||| | ||||||||||    
T  42126629 taattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 16591386 - 16591446
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||    
T  16591386 gcaatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaattt 16591446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 21525475 - 21525415
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  21525475 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 21525415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 35806911 - 35806851
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  35806911 gcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaattt 35806851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 42072545 - 42072485
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  42072545 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 42072485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 16523222 - 16523170
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    ||||||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  16523222 caatttcatatgtaaatccctatgaatttcttatataaatccctataaattgg 16523170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 14996761 - 14996678
Alignment:
Q  117 ttggtcccatatctataatttgtaccaatttggtcccg-tatgttttgcttcgatactagttttagtcctttcgggtagtttct 199  Q
    |||||||| ||  ||||||||||||||||||| ||||  |||||||||||| | ||||||||||||||||||| | ||||||||    
T  14996761 ttggtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 22324711 - 22324653
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  22324711 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 22324653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 26021513 - 26021460
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    |||||||||| |||||||| |||||||||||||||||||| | |||||||||||    
T  26021513 gcaatttcttttgtaaatccctatgaatttcttatataaacccctataaattgg 26021460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 2554002 - 2554050
Alignment:
Q  140 accaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttc 2554050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 24065390 - 24065330
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||| || |||||||||||||||||||||||||||   ||||||||||| ||||||    
T  24065390 gcaatttctcatataaatctctatgaatttcttatataaactcctataaattgggcaattt 24065330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 33934380 - 33934440
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  33934380 gcaatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 33934440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 42013989 - 42013929
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  42013989 gcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaattt 42013929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 14996608 - 14996659
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||| ||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagtcttttc 14996659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 43416265 - 43416360
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcg 168  Q
    ||||||||||||   |||| |||||||||||||||||||| |||||  |||| || |||||||||||| ||||||  || | ||||||||| ||||    
T  43416265 cttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 16818984 - 16819037
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    |||||||||| ||||||||||  ||||||||||||||||| | |||||||||||    
T  16818984 gcaatttcttttgtaaatctccttgaatttcttatataaacccctataaattgg 16819037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 19334900 - 19334840
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||| |||||   ||||||||| ||||||||| ||||||||||| ||||||||    
T  19334900 gcaatttcttatataaattcttatgaattttttatataaacctctataaattagacaattt 19334840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 29714691 - 29714742
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||| | |||||||| || || |||||||||||||||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttc 29714742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 26746067 - 26745991
Alignment:
Q  89 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 165  Q
    ||||||||||||| ||| |||| |||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  26746067 gtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 26745991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 43282863 - 43282915
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    |||||||||||||||||   | ||||||| ||||||||||| |||||||||||    
T  43282863 caatttcttatgtaaattcttctgaatttattatataaatccctataaattgg 43282915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 46003596 - 46003431
Alignment:
Q  70 agacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcga 169  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| |||| | |||||||||||      
T  46003596 agacttatttaatcatctggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcat 46003497  T
Q  170 tactagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    ||||||||||||||||||| ||||||||||||         |||||||||||||||||||||||||    
T  46003496 tactagttttagtcctttctggtagtttctctaaaaaaaacgttaacttatgtaccaatttggtcc 46003431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 40244627 - 40244756
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttgg-tcccgtatgttttgcttcgata 171  Q
    |||||||||||| | | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| |||||||||||| | ||    
T  40244627 cttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttgtta 40244726  T
Q  172 ctagttttagtcctttcgggtagtttctct 201  Q
    |||||||||||| |||| | ||||||||||    
T  40244727 ctagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 51663595 - 51663467
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||  |||||||||||  | |||    
T  51663595 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgttac 51663496  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| | ||||||||||    
T  51663495 tagttttagtcatttctgttagtttctct 51663467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 51663252 - 51663380
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||| ||||||| |||| |||||||||||||||||| | ||| ||||||  || |||||||||||| |||||| ||||| |||||||||||||| |||    
T  51663252 cttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgttac 51663351  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| ||||||||||||    
T  51663352 tagttttagtcatttctggtagtttctct 51663380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 20537930 - 20538056
Alignment:
Q  75 tattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatacta 174  Q
    |||| ||||| ||||||||||||||||||||||  | |||||||| |||| || ||||||||||| ||||||||||||| |||||||||||||  |||||    
T  20537930 tattgaatcatctggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcattacta 20538029  T
Q  175 gttttagtcctttcgggtagtttctct 201  Q
    ||||||||||||||   ||||||||||    
T  20538030 gttttagtcctttctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  74 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 173  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||| | || |||||||||||||||||||| |||| ||||||||| | || ||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgatccc-tatgttttgttccgttact 40364203  T
Q  174 agttttagt 182  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 20538279 - 20538151
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||| |||| || |||||||||||| |||||| ||    ||||||||||| || |||    
T  20538279 cttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgttac 20538180  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| | ||||||||||    
T  20538179 tagttttagtcatttctgttagtttctct 20538151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 46003251 - 46003378
Alignment:
Q  74 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 173  Q
    ||||||||||||| ||||| ||||||||||||||||| | ||||||||||| || |||||||||||| |||||||||||  |||||| || |  | |||     
T  46003251 ttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctgttctgttaca 46003350  T
Q  174 agttttagtcctttcgggtagtttctct 201  Q
    ||||||||||||||  | ||||||||||    
T  46003351 agttttagtcctttttgttagtttctct 46003378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 40364043 - 40364171
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    ||||||| ||||||   ||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||| |||| | | ||||||| || ||     
T  40364043 cttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgttat 40364142  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||  | ||||||||||    
T  40364143 tagttttagtcatttttgttagtttctct 40364171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 3178819 - 3178760
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3178819 caatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaattt 3178760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 13856215 - 13856156
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  13856215 caatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaattt 13856156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 10839391 - 10839451
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||    
T  10839391 gcaatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaattt 10839451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 40244933 - 40244873
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctata 133  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||    
T  40244933 cttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 5391573 - 5391514
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  5391573 caatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 5391514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 19649385 - 19649443
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||| |||||||||||||||||||| |  |||||||||||||||||    
T  19649385 aatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaattt 19649443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 6280370 - 6280431
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattta 70  Q
    |||||||||||||||||| ||  ||||||||||||||||| ||||||||||| |||||||||    
T  6280370 gcaatttcttatgtaaatttccctgaatttcttatataaacctctataaatttgacaattta 6280431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 8950515 - 8950575
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||  |||||||||||||||||||||| ||||||||||| ||||||    
T  8950515 gcaatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaattt 8950575  T

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Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 21853314 - 21853254
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  21853314 gcaatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggcaattt 21853254  T

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Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 20382634 - 20382583
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  20382634 aatttcttatgtaaatccctatgaatttcttatataaacccctataaattgg 20382583  T

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Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 46003446 - 46003395
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttc 46003395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 1781879 - 1781819
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||| || ||||||||||||||||| | | ||||||||| ||||||    
T  1781879 gcaatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaattt 1781819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 36539749 - 36539689
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||| |||| ||||||||||||||  | ||||||||||| ||||||    
T  36539749 gcaatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaattt 36539689  T

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Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 40845928 - 40845988
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  40845928 gcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 40845988  T

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Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 54547021 - 54546961
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||| ||||||  || ||||||||||||||||| | ||||||||||||||||||    
T  54547021 gcaatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaattt 54546961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 19644340 - 19644398
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||| ||||||||||  |||||||||| |||||||||||| ||||||||| |||||||    
T  19644340 aattttttatgtaaattgctatgaattttttatataaatctttataaattgaacaattt 19644398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 23467507 - 23467565
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  23467507 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 23467565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 27642777 - 27642724
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    |||||||||||||||||||  | |||||||||||||||||||  ||||||||||    
T  27642777 gcaatttcttatgtaaatccttttgaatttcttatataaatccttataaattgg 27642724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 44994979 - 44995040
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctc-tataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | | |||||||||| ||||||    
T  44994979 gcaatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattgggcaattt 44995040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 32352964 - 32352904
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| | |||||| |||||||||||||||||||| | ||||||||| | ||||||    
T  32352964 gcaatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaattt 32352904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 39352310 - 39352251
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||| ||||| ||| | |||||||||||||||||||||||||||  |||||||    
T  39352310 gcaatttcttat-taaatttctctaaatttcttatataaatctctataaatttaacaattt 39352251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 43347347 - 43347407
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  || ||||||||||||||||| | ||| ||||||| ||||||    
T  43347347 gcaatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaattt 43347407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 20538076 - 20538122
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtc 183  Q
    ||||||||||||||||| |||||||||||| | || |||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagtc 20538122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 33103860 - 33103799
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattta 70  Q
    ||||||||||||||||||  |  | |||||||||||||| || |||||||||||| ||||||    
T  33103860 gcaatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataattta 33103799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 47889823 - 47889783
Alignment:
Q  29 ctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||||||  ||||||||||| ||||||    
T  47889823 ctatgaatttcttatataaattcctataaattgggcaattt 47889783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 2916380 - 2916541
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| | || ||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||||||| | |||    
T  2916380 cttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgttac 2916479  T
Q  173 tagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    |||||||| ||||||| | ||||||||||        |||||||||||||||||||||||||    
T  2916480 tagttttaatcctttctgttagtttctctcaaaaaacgttaacttatgtaccaatttggtcc 2916541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 16973066 - 16973228
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||||||| |||    
T  16973066 cttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgttac 16973165  T
Q  173 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    |||||||| | ||||| | ||||||||||         |||||||||||||||||||||||||    
T  16973166 tagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcc 16973228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 44594583 - 44594455
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||||||||| || |||||||||||| |||||||||||  |||||||||||||| |||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| ||||||||||||    
T  44594483 tagttttagtcatttctggtagtttctct 44594455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 38982901 - 38982740
Alignment:
Q  74 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 173  Q
    ||||||| |||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| || |||||||||||||  ||||    
T  38982901 ttattcagtcaccaagtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattact 38982802  T
Q  174 agttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    |||||||||| |||| ||||||||||||         |||||||||||||||||||||||||    
T  38982801 agttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtaccaatttggtcc 38982740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 16973409 - 16973281
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||  |||||||||||  ||||||||||| |  |||    
T  16973409 cttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccattac 16973310  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||| |  |||||||||    
T  16973309 tagttttagtcatttctgtcagtttctct 16973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 40987659 - 40987787
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||| ||||| | |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| ||| | ||||||||| || | |||    
T  40987659 cttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgttac 40987758  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||  | ||||||||||    
T  40987759 tagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 44594250 - 44594366
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgcttcgata 171  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  || || |||||||||||| |||||||||||  |||||||||||  | ||    
T  44594250 cttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctctgtta 44594349  T
Q  172 ctagttttagtcctttc 188  Q
    ||||||||||| |||||    
T  44594350 ctagttttagttctttc 44594366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 38982559 - 38982674
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||| ||||||||| | ||| |||||||||||||||||||||||||||  || || |||||||||||||||||||||||   |||||||||||||| | |    
T  38982559 cttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgttgc 38982658  T
Q  173 tagttttagtcctttc 188  Q
    ||||||||||||||||    
T  38982659 tagttttagtcctttc 38982674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 11533790 - 11533674
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggt-cccgtatgttttgcttcgata 171  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||||||||  | |||||||||||||||||||||| ||| ||||||||||||   ||    
T  11533790 cttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgctttatta 11533691  T
Q  172 ctagttttagtcctttc 188  Q
    |||||||||||| ||||    
T  11533690 ctagttttagtcatttc 11533674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 2916721 - 2916594
Alignment:
Q  74 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 173  Q
    ||||||||||| ||  | ||||||||||||||||||||||||||||||||| || |||| ||||||||||| ||| |||  ||| |||||||  | ||||    
T  2916721 ttattcaatcatctaattccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttact 2916622  T
Q  174 agttttagtcctttcgggtagtttctct 201  Q
    |||||| |||||||| | ||||||||||    
T  2916621 agttttggtcctttctgttagtttctct 2916594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 234
Target Start/End: Complemental strand, 24126245 - 24126113
Alignment:
Q  96 aacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagt 195  Q
    ||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||| |||||||||||      ||||||||||||||||  | ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T
Q  196 ttctctnnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    ||||||         |||||||||||| |||||||||||    
T  24126151 ttctctaaaaaaacattaacttatgtatcaatttggtcc 24126113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 13559646 - 13559519
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||||| || || |||||||||||| ||| |||||||| | || ||||||  | |||    
T  13559646 cttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctttgctctgttac 13559548  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||| ||||||| |||  | ||||||||||    
T  13559547 tagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 6318470 - 6318529
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  6318470 caatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 6318529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 24125975 - 24125876
Alignment:
Q  96 aacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcgggtagt 195  Q
    ||||||||| ||| ||||||||||||| | || ||||||||||||||||||||||||| |||||||||||      ||||||||||| ||||| | ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 29846559 - 29846499
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  29846559 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaattt 29846499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 40987987 - 40987899
Alignment:
Q  77 ttcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 165  Q
    |||||||||| |||| |||||||||||| |||||||||||||| |||  || ||||||||||||  ||||||||||| ||| |||||||    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgct 40987899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 24125672 - 24125737
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttg 138  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  24125672 cttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 14942055 - 14942115
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  14942055 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 14942115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 40277299 - 40277359
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||    
T  40277299 gcaattttttatgtaaatccctataaatttcttatataaatccctataaattgggcaattt 40277359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 41674717 - 41674777
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||||||| ||||||| ||||||||| |  |||||||||||||||||    
T  41674717 gcaatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaattt 41674777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 42769769 - 42769829
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  42769769 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 42769829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 16973213 - 16973264
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttc 16973264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 33009789 - 33009730
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||| |||||| |||||||||| |||||||||||  |||||||||||||||||    
T  33009789 caatttcttatataaatccctatgaatttgttatataaatccttataaattggacaattt 33009730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 2888156 - 2888098
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||||||||||||| |||||||||   |||||||||| |||||||    
T  2888156 aatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaattt 2888098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 14186451 - 14186509
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  14186451 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 14186509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 19181665 - 19181605
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  19181665 gcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 19181605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 3956688 - 3956629
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||| ||||||||||| |||||||||| ||||||||| | || |||||||||||||||    
T  3956688 caattttttatgtaaatccctatgaatttattatataaacccctgtaaattggacaattt 3956629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 38982755 - 38982704
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||||| ||||||||||| || | || ||||||||||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttc 38982704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Complemental strand, 44594436 - 44594385
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||| ||||| ||||||||||| || | |||||||||||||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttc 44594385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 14539715 - 14539775
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||| |  || ||||||||||||||||||  ||||||||| | ||||||    
T  14539715 gcaatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaattt 14539775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 39161284 - 39161451
Alignment:
Q  67 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 166  Q
    ||||| |||||||||||||| | ||| ||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  39161284 tttaggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctt 39161383  T
Q  167 cgatactagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    || ||||||||||||||||||| |  |||||||||         ||||||||||||||||||||||||    
T  39161384 cgttactagttttagtcctttctgaaagtttctctcaaaaaacattaacttatgtaccaatttggtcc 39161451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 188
Target Start/End: Complemental strand, 50509473 - 50509358
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| |||||||||||| | |||    
T  50509473 cttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttac 50509374  T
Q  173 tagttttagtcctttc 188  Q
    || |||||||| ||||    
T  50509373 taattttagtcttttc 50509358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 55173603 - 55173470
Alignment:
Q  68 ttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttc 167  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||||| |||| |||||||     
T  55173603 ttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgctttgcttt 55173504  T
Q  168 gatactagttttagtcctttcgggtagtttctct 201  Q
    | |||| ||||||||| |||  | ||||||||||    
T  55173503 gttacttgttttagtcttttttgctagtttctct 55173470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 187
Target Start/End: Original strand, 47096802 - 47096914
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||| | ||| |||||||||||||| |||    
T  47096802 cttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaattt-gccccctatgttttgcttcgttac 47096899  T
Q  173 tagttttagtccttt 187  Q
    | |||||||||||||    
T  47096900 ttgttttagtccttt 47096914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 39161632 - 39161504
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    ||||||||| || | ||| ||||||||||||||||||| | ||||||||||| || ||||||||||||||||||| ||||  ||||||||||| || ||     
T  39161632 cttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctatgttttgctccgttat 39161533  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    |||||||||||||||| | ||||||||||    
T  39161532 tagttttagtcctttctgttagtttctct 39161504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 37996068 - 37996177
Alignment:
Q  74 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 173  Q
    ||||||||||||||| |||||||| | || ||||||| ||||||||||||| || |||||||||||| |||||||||||| |||||||||||| | || |    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttatt 37996167  T
Q  174 agttttagtc 183  Q
    ||||||||||    
T  37996168 agttttagtc 37996177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 55173336 - 55173452
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggt-cccgtatgttttgcttcgata 171  Q
    ||||||| |||| | ||| ||||||||||||||||||||| ||||||||||| || ||||||||||||  |||||||| ||| ||| ||||||| || ||    
T  55173336 cttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgtta 55173435  T
Q  172 ctagttttagtcctttc 188  Q
    |||||||||||||||||    
T  55173436 ctagttttagtcctttc 55173452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 47097142 - 47097017
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| | | || |||||||||||||||||||||||||| ||||  || |||||||||||||||||||| ||   ||||||||||  || |||    
T  47097142 cttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgatc---tatgttttgccccgttac 47097046  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    ||||||||||| |||  | ||||||||||    
T  47097045 tagttttagtcatttttgttagtttctct 47097017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 11054573 - 11054515
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaat 67  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  11054573 gcaatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaat 11054515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 31377506 - 31377447
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||    
T  31377506 caatttcttatgtaaatccctatgaatttcttatataaccctctataaattgggcaattt 31377447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 52632633 - 52632575
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 52632575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 1535888 - 1535828
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  1535888 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 1535828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 49284474 - 49284414
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  49284474 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 49284414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 2623496 - 2623449
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttgg 120  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||    
T  2623496 cttattcaatcactcggtcccttaacttaattgattgtctcaatttgg 2623449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 12792244 - 12792301
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatt 68  Q
    |||||||||||||||| ||| ||||||||||||||||| | ||||||||||| |||||    
T  12792244 aatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaatt 12792301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 37801275 - 37801328
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    |||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||    
T  37801275 gcaatttcttgtgtaaatttctatgaattttttatataaatccctataaattgg 37801328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 47084129 - 47084076
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    |||||||||||||||||| ||| ||||||||||||||||| | |||||||||||    
T  47084129 gcaatttcttatgtaaatttctctgaatttcttatataaacccctataaattgg 47084076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 16338224 - 16338284
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| || |||||||  |||||||||| ||||||||||| ||||||||||||||||||    
T  16338224 gcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaattt 16338284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 20818684 - 20818624
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  20818684 gcaatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaattt 20818624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 34241110 - 34241050
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||| ||| |||||||||||||||||||| | ||||||||||| ||||||    
T  34241110 gcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattgggcaattt 34241050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 36012196 - 36012256
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  36012196 gcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 36012256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 50328913 - 50328853
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||  || | ||||||||||||||| ||||||||||||||||||||    
T  50328913 gcaatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaattt 50328853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 10094406 - 10094457
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattgg 62  Q
    |||||||||||||||| ||| ||||||||||||||||| | |||||||||||    
T  10094406 aatttcttatgtaaatttctctgaatttcttatataaacccctataaattgg 10094457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 17888562 - 17888621
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||  |||||||||||||||||||  | ||||||||||| ||||||    
T  17888562 caatttcttatgtaaattcctatgaatttcttatataaccccctataaattgggcaattt 17888621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 25954867 - 25954807
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||  ||||||||||||||||||||   ||||||||||| ||||||    
T  25954867 gcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattgggcaattt 25954807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 9742545 - 9742604
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||  || |||||||||||||| || | ||||||||||| ||||||    
T  9742545 caatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaattt 9742604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 39161436 - 39161487
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||||| ||||||||| | || | |||||||||||||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttc 39161487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 35322717 - 35322775
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||| |||| ||||| ||| ||||| ||||||||||| |||||||||||| |||||||    
T  35322717 aattttttatataaatttctctgaatctcttatataaacctctataaattgaacaattt 35322775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 46583554 - 46583612
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||| || |||||||| |||||||||||||||||||| | ||||||||| | ||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaattt 46583612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 322584 - 322620
Alignment:
Q  33 gaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||| | ||||||||||||||||||    
T  322584 gaatttcttatataaacccctataaattggacaattt 322620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 9738136 - 9738212
Alignment:
Q  89 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 165  Q
    ||||||||||||||||| ||||  ||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  9738136 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 9738212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 19124749 - 19124801
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 61  Q
    ||||||||||||||||||  || |||||||||||||||||  ||| |||||||    
T  19124749 gcaatttcttatgtaaattcctctgaatttcttatataaacatctgtaaattg 19124801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 46474111 - 46474051
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  || ||||||| ||||||||| |  ||||||||| |||||||    
T  46474111 gcaatttcttatgtaaattcctgtgaattttttatataaacccatataaattgtacaattt 46474051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 47096947 - 47096999
Alignment:
Q  137 tgtaccaatttggtcccg-tatgttttgcttcgatactagttttagtcctttc 188  Q
    |||||||||||||||||  ||||||||||| |  |||||||||||||||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttc 47096999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 23050 - 22922
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||  ||||||||||| || |||    
T  23050 cttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgttac 22951  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    |||||||||||||||| | ||||||||||    
T  22950 tagttttagtcctttctgttagtttctct 22922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 21249364 - 21249526
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||  ||||| |||||||||||| ||||| |||||||||||||| |||    
T  21249364 cttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgttac 21249463  T
Q  173 tagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    |||||||| ||||||| | ||||||||||         |||||||||||||||||||||||||    
T  21249464 tagttttaatcctttctgttagtttctctcaaaaaaatgttaacttatgtaccaatttggtcc 21249526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 10081261 - 10081202
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  10081261 caatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 10081202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 9737993 - 9738054
Alignment:
Q  10 caatttcttatgtaaa--tctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||||    
T  9737993 caatttcttatgtaaaaatccctatgaatttcttatataaatccctataaattggacaattt 9738054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 11856410 - 11856352
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  11856410 aatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaattt 11856352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 42119737 - 42119679
Alignment:
Q  11 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||    
T  42119737 aatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaattt 42119679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 23218602 - 23218542
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  23218602 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 23218542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 38397715 - 38397655
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  38397715 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 38397655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 8456975 - 8457034
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||| |||||||||||||||||||  | ||||||||||| ||||||    
T  8456975 caatttcttatgtaaatccctatgaatttcttatataaccccctataaattgggcaattt 8457034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 16618582 - 16618641
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||| |||||||| ||||||||||||||||||||   ||||||||||||||||||    
T  16618582 caatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaattt 16618641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 25560339 - 25560398
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  ||| |||||||||||||||  |||||||||||||||||||    
T  25560339 caatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaattt 25560398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 29491425 - 29491483
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaatt 68  Q
    |||||||||||||||||| |||||||||||||||||| || | |||||||||||||||||    
T  29491425 gcaatttcttatgtaaatttctatgaatttcttatat-aacccctataaattggacaatt 29491483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 33271282 - 33271341
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||  |  ||||||||||||||||| ||||||||||||||||||||    
T  33271282 caatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaattt 33271341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 21249679 - 21249629
Alignment:
Q  72 acttattcaatcacctggtcccttaacttaattgattgtctcaatttggtc 122  Q
    ||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  21249679 acttattcaatcatcttgtcccttaacttaattgattgtcttaatttggtc 21249629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 6257421 - 6257481
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||| ||| | ||||||||||| ||||||    
T  6257421 gcaatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggcaattt 6257481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 37169044 - 37169104
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| || |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  37169044 gcaattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 37169104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 39862498 - 39862558
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||  |||||||||||||||||||| | ||||||||||| ||||||    
T  39862498 gcaatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaattt 39862558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 29790231 - 29790290
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||   ||||||||||||||||||| || |||||||||| ||||||    
T  29790231 caatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaattt 29790290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 187  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||||||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 614403 - 614463
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  || ||||||| ||||||||||| ||||||||| | ||||||    
T  614403 gcaatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaattt 614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 15631730 - 15631670
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaa-tctctataaattggacaattt 69  Q
    ||||||||| | |||||| ||||||||||||||||||||  | ||||||||||||||||||    
T  15631730 caatttcttgtataaatccctatgaatttcttatataaaccccctataaattggacaattt 15631670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 36769085 - 36769145
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  || ||||||||||||||||| |||||| |||| | ||||||    
T  36769085 gcaatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaattt 36769145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 15475408 - 15475457
Alignment:
Q  12 atttcttatgtaaatctctatgaatttcttatataaatctctataaattg 61  Q
    ||||||||||||||| ||| | ||||| |||||||||||| |||||||||    
T  15475408 atttcttatgtaaatttctcttaattttttatataaatctatataaattg 15475457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 27916257 - 27916205
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 61  Q
    ||||||||||||||||||  || |||||||||||||||||   ||||||||||    
T  27916257 gcaatttcttatgtaaattcctctgaatttcttatataaactcctataaattg 27916205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 28715645 - 28715772
Alignment:
Q  74 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 173  Q
    ||||||||||||| ||||||||||||||||| ||||| | ||||||||  | || |||||||||||| |||||||||||| |||||||||||||| ||||    
T  28715645 ttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcgttact 28715744  T
Q  174 agttttagtcctttcgggtagtttctct 201  Q
    ||||||||||||||| ||||||||||||    
T  28715745 agttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 41985912 - 41986040
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| |||| || |||||||||||  |||||||||||| |||||||||||| | |||    
T  41985912 cttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgttac 41986011  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    || ||||||||||||| | ||||||||||    
T  41986012 taattttagtcctttccgttagtttctct 41986040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 68 - 183
Target Start/End: Original strand, 30862215 - 30862330
Alignment:
Q  68 ttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttc 167  Q
    |||| ||||||||||||   ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| ||||||||     
T  30862215 ttaggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgcttt 30862314  T
Q  168 gatactagttttagtc 183  Q
    | ||||||||||||||    
T  30862315 gttactagttttagtc 30862330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 28715993 - 28715859
Alignment:
Q  67 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 166  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||  || ||||||||     
T  28715993 tttaggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctc 28715894  T
Q  167 cgatactagttttagtcctttcgggtagtttctct 201  Q
     |  ||||||||||||| |||| | ||||||||||    
T  28715893 agtcactagttttagtcatttctgttagtttctct 28715859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 6474282 - 6474411
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatg-ttttgcttcgata 171  Q
    |||||||||| ||| | |||||||||||||||||||||||||||||| |||| || ||||||||| || |||||||||||| |||| |||||||| | ||    
T  6474282 cttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgtttttgctttgtta 6474381  T
Q  172 ctagttttagtcctttcgggtagtttctct 201  Q
    |||||||||||| |||| | ||||||||||    
T  6474382 ctagttttagtcttttctgttagtttctct 6474411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 6474631 - 6474464
Alignment:
Q  67 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgctt 166  Q
    ||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||| | || |||||| ||||||| ||||| |||| |||| ||||||     
T  6474631 tttaggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctc 6474533  T
Q  167 cgatactagttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcc 234  Q
     | ||||||||||||||||||  | ||||||||||         |||||||||||||||||||||||||    
T  6474532 tgttactagttttagtcctttatgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcc 6474464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 47373792 - 47373679
Alignment:
Q  88 ggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 187  Q
    ||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||| | ||||||||| |  | ||||||||||| ||||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttt 47373693  T
Q  188 cgggtagtttctct 201  Q
      | ||||||||||    
T  47373692 atgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 47373464 - 47373627
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccata--tctataatttgtaccaatttggtcccgtatgttttgcttcgat 170  Q
    |||||||||||||  | || ||||||||||||||||||||||||||| |||  ||  | |||||||||||||||||||||||| |||||||||||  | |    
T  47373464 cttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctgtt 47373563  T
Q  171 actagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcc 234  Q
     |||||||||||| |||  | ||||||||||        |||||||||||||||||||| ||||    
T  47373564 gctagttttagtcatttatgttagtttctctcaaaaaacgttaacttatgtaccaatttagtcc 47373627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 30862564 - 30862437
Alignment:
Q  74 ttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatact 173  Q
    |||||||||||  ||||||||||| | |||||||||| ||||||| || || || |||||||||||| |||||||||||| |||||||||||  | ||||    
T  30862564 ttattcaatcaattggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttact 30862465  T
Q  174 agttttagtcctttcgggtagtttctct 201  Q
    | |||||||| |||| | ||||||||||    
T  30862464 aattttagtcttttctgttagtttctct 30862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 41986253 - 41986183
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtacca 143  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||||| |||| || |||||||||||||||    
T  41986253 cttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 22226723 - 22226666
Alignment:
Q  67 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtccc 124  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  22226723 tttaggcttattcaatcacctgatcccttagcttaattgattgtctcaatttggtccc 22226666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 19334571 - 19334631
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||    
T  19334571 gcaatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaattt 19334631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 29981124 - 29981184
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  29981124 gcaatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaattt 29981184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10576790 - 10576730
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  10576790 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 10576730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 32876541 - 32876601
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||| ||| |||||||||||||||||||| | ||||||||||||||||||    
T  32876541 gcaatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaattt 32876601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 34259635 - 34259575
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  34259635 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 34259575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 34707233 - 34707173
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||| ||||||    
T  34707233 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaattt 34707173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 44164754 - 44164814
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| ||||||| ||||||||||||||||||||| | ||||||||||| ||||||    
T  44164754 gcaatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggcaattt 44164814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 29555951 - 29556010
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||| |||||||  |||||||||||||||||||| | ||||||||||||||||||    
T  29555951 caatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaattt 29556010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 33057669 - 33057728
Alignment:
Q  10 caatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||| |||||||||||||||||||  | |||||||||| |||||||    
T  33057669 caatttcttatgtaaatccctatgaatttcttatataatcccctataaattgaacaattt 33057728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 29238154 - 29238214
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||| |||||||| |||||    
T  29238154 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattggaaaattt 29238214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 6271296 - 6271188
Alignment:
Q  89 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||||| || |  ||| |||||||| ||  ||||||||||||||| || ||||  || |||||||| || |||||||||  ||||||||    
T  6271296 gtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttc 6271197  T
Q  189 gggtagttt 197  Q
     | ||||||    
T  6271196 tgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 9770776 - 9770716
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||||||||    ||||||||||||||||| | |||| |||||||||||||    
T  9770776 gcaatttcttatgtaaatcatcctgaatttcttatataaaccactatgaattggacaattt 9770716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 15017890 - 15017830
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  || |||||||||||||||||    |||||||||||||||||    
T  15017890 gcaatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaattt 15017830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 17303125 - 17303185
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  |||||||||||||||||||| |  | |||||||| ||||||    
T  17303125 gcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattgggcaattt 17303185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 24320450 - 24320510
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||  ||| |||||||||||||||| | ||||||||||| ||||||    
T  24320450 gcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaattgggcaattt 24320510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 38408229 - 38408153
Alignment:
Q  89 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 165  Q
    ||||||||||||||||| |||| |||| |||||||| ||  ||||||||||||||| || ||||  || ||||||||    
T  38408229 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgct 38408153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 187  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||||||||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10334295 - 10334235
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaa-tctctataaattggacaattt 69  Q
    ||||||||||||||||||  || ||||||||||||||||| ||| |||||||||| ||||||    
T  10334295 gcaatttcttatgtaaattcctctgaatttcttatataaactct-tataaattgggcaattt 10334235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 24798974 - 24798843
Alignment:
Q  66 atttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 165  Q
    |||||| |||||||||||||| | |||||||| |||||||||||||| |||||| |||| || |||||||||||| |||||||||||| |||||||||||    
T  24798974 atttaggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgct 24798875  T
Q  166 tcgatactagttttagtcctttcgggtagttt 197  Q
    ||| |||||||||||||||||||  |||||||    
T  24798874 tcgttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 2216923 - 2216813
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| | ||     
T  2216923 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttat 2216824  T
Q  173 tagttttagtc 183  Q
    |||||||||||    
T  2216823 tagttttagtc 2216813  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 18494736 - 18494862
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||| ||||||| | |||    
T  18494736 cttattcaatcacatggtcccttaactttattgattgtctcaatttggtccc-tagctataatttgtaccattttggtcccctatg-tttgctttgttac 18494833  T
Q  173 tagttttagtcctttcgggtagtttctct 201  Q
    |||||||||||||||  | ||||||||||    
T  18494834 tagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 76 - 234
Target Start/End: Original strand, 11643754 - 11643913
Alignment:
Q  76 attcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactag 175  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||| || |||||||||||| ||||||||| || ||||||||| || | ||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  176 ttttagtcctttcgggtagtttctct-nnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    |||||||||| || | ||||||||||         |||||||||||||||||||||||||    
T  11643854 ttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcc 11643913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 24798642 - 24798755
Alignment:
Q  88 ggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 187  Q
    |||||||||||||||||| |||| ||||||||||||| |  ||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||    
T  24798642 ggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgttactagttttagtcattt 24798741  T
Q  188 cgggtagtttctct 201  Q
    | | ||||||||||    
T  24798742 ctgttagtttctct 24798755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 11644099 - 11643979
Alignment:
Q  67 tttagacttattcaatcacctggtcccttaacttaattgattgtctcaatttggt-cccatatctataatttgtaccaatttggtcccgtatgttttgct 165  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||| |||||||| ||    
T  11644099 tttaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggtccc-tatgtttt-ct 11644002  T
Q  166 tcgatactagttttagtcctttc 188  Q
    | | |||||||||||||| ||||    
T  11644001 ttgttactagttttagtcttttc 11643979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 24690357 - 24690449
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgct 165  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||  |||||||||||    
T  24690357 cttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 18495077 - 18494916
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| || |||||||||||||||||||| | | |||||| |||| || |||||||||||| |||||||||||| ||| ||||| | || ||     
T  18495077 cttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgttat 18494978  T
Q  173 tagttttagtcctttcgggtagtttctctnnnnnnnngttaacttatgtaccaatttggtcc 234  Q
    |||||||||| ||||| | ||||||||||        ||||||||||||| |||||||||||    
T  18494977 tagttttagttctttctgttagtttctctaaaaaaacgttaacttatgtagcaatttggtcc 18494916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 153
Target Start/End: Complemental strand, 24690694 - 24690611
Alignment:
Q  70 agacttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtccc 153  Q
    ||||||||||||||||| | ||||||||||||||||||||| | |||||||| || || |||||||||||||||||||||||||    
T  24690694 agacttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtccc 24690611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 9231865 - 9231925
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  9231865 gcaatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaattt 9231925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 14309809 - 14309869
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  14309809 gcaatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaattt 14309869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 1727944 - 1727996
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 61  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  1727944 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattg 1727996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 13627657 - 13627605
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattg 61  Q
    |||||||||| |||||||| |||||||||||||||||||| | ||||||||||    
T  13627657 gcaatttcttgtgtaaatccctatgaatttcttatataaacccctataaattg 13627605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 24694662 - 24694722
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||| |||||||| ||||||||||||||||||||   ||||||||||| ||||||    
T  24694662 gcaatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaattt 24694722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 27863812 - 27863756
Alignment:
Q  13 tttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    |||||||||||||| ||| ||||||||||||||||| |  |||||||||||||||||    
T  27863812 tttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaattt 27863756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 11643898 - 11643949
Alignment:
Q  137 tgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttc 188  Q
    ||||||||||||||||| ||||||||||| || |||||||||||||| ||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcatttc 11643949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 24798822 - 24798769
Alignment:
Q  136 ttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtcctttcg 189  Q
    ||||| |||||||||||| ||||||||||| || | ||||||||||||||||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttcg 24798769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 13103129 - 13103189
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| ||||||||||  || ||||||||||||||||| || |||||||||| ||||||    
T  13103129 gcaattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaattt 13103189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 28750661 - 28750721
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||   | ||||||||||||||||| | ||||||||||| ||||||    
T  28750661 gcaatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaattt 28750721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 9955698 - 9955643
Alignment:
Q  89 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaa 144  Q
    ||||||||||||||||| |||| |||| |||||||| ||  |||||||||||||||    
T  9955698 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaa 9955643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 187
Target Start/End: Original strand, 9954825 - 9954923
Alignment:
Q  89 gtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 187  Q
    ||||||||||||||||| ||||  ||| |||||||| ||  ||||||||||||||| || ||||  || |||||||| || ||| |||||  |||||||    
T  9954825 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagtttcggtccttt 9954923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 24497585 - 24497645
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| || |||||||  || ||||||||||||||||| | ||||||||||| ||||||    
T  24497585 gcaattttttgtgtaaattcctctgaatttcttatataaacccctataaattgggcaattt 24497645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 5380 - 5270
Alignment:
Q  73 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccatatctataatttgtaccaatttggtcccgtatgttttgcttcgatac 172  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| | ||     
T  5380 cttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgttat 5281  T
Q  173 tagttttagtc 183  Q
    |||||||||||    
T  5280 tagttttagtc 5270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 20842 - 20902
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||||||||||||||  || ||||||||||||||||| ||||||||||||||||||||    
T  20842 gcaatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaattt 20902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 34463 - 34519
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggaca 65  Q
    ||||||||||||||||||| || ||||||  ||||||||||||||||||||||||||    
T  34463 gcaatttcttatgtaaatccctctgaattctttatataaatctctataaattggaca 34519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 54636 - 54576
Alignment:
Q  9 gcaatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 69  Q
    ||||||| || |||||||  |||||||||| ||||||||||| ||||||||||||||||||    
T  54636 gcaattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaattt 54576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 108055 - 108111
Alignment:
Q  131 ataatttgtaccaatttggtcccgtatgttttgcttcgatactagttttagtccttt 187  Q
    |||||||||| |||||||||||  | ||||||||| |  ||||||||||||||||||    
T  108055 ataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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