View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_5 (Length: 454)
Name: NF9753_high_5
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 32343613 - 32344037
Alignment:
| Q |
18 |
tatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaacactaagcatattcctac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
32343613 |
tatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaacactaagcatatccccac |
32343712 |
T |
|
| Q |
118 |
aaccaaaatgaacttcatctccatgacagtattaatctatgtgactatagtaaaacacacttcacttacacaactttatacaaatatgcaccatatacgc |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32343713 |
aaccaaaatgaacttcatctccatgacaatattaatctatgtgactatagtaaaacacacttcacttacaccactttatacaaatatgcaccatatacgc |
32343812 |
T |
|
| Q |
218 |
atgcatttatatagtagtttgcatgcatgagaaaatgagcactgaatattcaaatatcaaaatctnnnnnnntaaattgaaatatttaatgtccaattgt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
32343813 |
atgcatttatatagtagtttgcatgcatgagaaaatgagcactgaatattcaaatatcaaaatgtaaaaaaataaattgaaatatttaatgtccaattgt |
32343912 |
T |
|
| Q |
318 |
aggggttaggtttaattgctaccacatacaccacacaatttaccttctcttaccataatagtccagctctatcacatgcatggtatgtgaaggtacattc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32343913 |
aggggttaggtttaattgctaccacatacaccacacaatttaccttctcttaccataatagtctagctctatcacatgcatggtatgtgaaggtacattc |
32344012 |
T |
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| Q |
418 |
gcattcatatcgaccatattgcacc |
442 |
Q |
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||||||||||||||||||||||||| |
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| T |
32344013 |
gcattcatatcgaccatattgcacc |
32344037 |
T |
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