View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_51 (Length: 209)
Name: NF9753_high_51
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 43603445 - 43603270
Alignment:
| Q |
18 |
gattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaag |
117 |
Q |
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| T |
43603445 |
gattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaag |
43603346 |
T |
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| Q |
118 |
ggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaagaaggattacagaaaaaattagtccta |
193 |
Q |
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| T |
43603345 |
ggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaagaaggattacagaaaaaattagtccta |
43603270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 43616397 - 43616244
Alignment:
| Q |
20 |
ttttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaaggg |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||| ||||| || |||||||| |||||||||||| |||||| |||||| |||| | |
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| T |
43616397 |
ttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagag |
43616298 |
T |
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| Q |
120 |
caataccatgcacattcagagctaaagtaattctgaaaagcaaccaagaaggat |
173 |
Q |
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| T |
43616297 |
caataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggat |
43616244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 43609852 - 43609678
Alignment:
| Q |
20 |
ttttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaagcagaagtgtaaacaaggg |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||| ||| || | ||||||||| ||| ||| | |
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| T |
43609852 |
ttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtataagaaagag |
43609753 |
T |
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| Q |
120 |
caataccatgcacattcagagctaaagtaattctg-aaaagcaaccaagaaggattacagaaaaaattagtccta |
193 |
Q |
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||| ||||||||||||||||| |||||||| |||| ||||||||||||| ||||||| ||| ||||||||||| |
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| T |
43609752 |
caacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggattatagacctaattagtccta |
43609678 |
T |
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