View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9753_high_52 (Length: 207)
Name: NF9753_high_52
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_52 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 15616962 - 15617154
Alignment:
| Q |
12 |
atcagtacggatcactctatatctatacttgatgaaccatggttagtgaatgaggatcacatagatggaaatattgtgggggtaaactttgtgagggatt |
111 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15616962 |
atcagtacgggtcactctatatctatacttgatgaaccatggttagtgaatgaggatgacatagatggaaatattgtgggggtaaactttgtgagggatt |
15617061 |
T |
|
| Q |
112 |
ttcatatgaatagtttgatgaattcctcgtcgaatggctggaatgaggaagtgattcaacaagtgtttagtttcaatacagccgaatcttttc |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
15617062 |
ttcatatgaatagtctgatgaattcctcgtcgaatggctagaatgaggaagtgattcaacaagtgtttagtttcaatacagctgaattttttc |
15617154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 16042836 - 16042920
Alignment:
| Q |
23 |
tcactctatatctatacttgatgaaccatggttagtgaatgaggatcacatagatggaaatattgtgggggtaaactttgtgagggatttt |
113 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | |||| ||||||||| |||||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
16042836 |
tcactctatatcaatactttatgaaccat------taaatggggatcacatggatggaaatattatgggtgaaaactttgtgagggatttt |
16042920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 43219386 - 43219220
Alignment:
| Q |
16 |
gtacggatcactctatatctatacttgatgaaccatggttagtgaatgaggatcacatagatggaaatattgtgggggtaaactttgtgagggattttca |
115 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| ||||| |||||| ||| | ||| |||||||||||| |||| | ||||||||||||||||||| | |
|
|
| T |
43219386 |
gtacgggtcactctatatcaatacttgatgaaccttggttgttgaatggggaccgcattgatggaaatattatgggtgcaaactttgtgagggattttta |
43219287 |
T |
|
| Q |
116 |
tatgaatagtttgatgaattcctcgtcgaatggctggaatgaggaagtgattcaacaagtgtttagt |
182 |
Q |
| |
|
| || |||| ||||| || |||| |||| || ||||| ||||||| |||||||||||||||||| |
|
|
| T |
43219286 |
tgggagtagtctgatgcatgtctcgacgaagggttggaaccaggaagttattcaacaagtgtttagt |
43219220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 4608920 - 4609010
Alignment:
| Q |
23 |
tcactctatatctatacttgatgaaccatggttagtgaatgaggatcacatagatggaaatattgtgggggtaaactttgtgagggatttt |
113 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||| ||| | |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
4608920 |
tcactctatatctatacttcatgagtcatggtttttgaatggggaccgcatagatggaaatagtgtggggaaaaactttgtgagggatttt |
4609010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University