View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_high_6 (Length: 454)
Name: NF9753_high_6
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 32251247 - 32251675
Alignment:
| Q |
16 |
cagattctgcatctgtagcttcaagcataaaatatcatgctgagttcaccacatctttttctcctgagaaatttgagcccagtaaggcttactttgcaac |
115 |
Q |
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| T |
32251247 |
cagattctgcatctgtagcttcaagcataaaatatcatgctgagttcaccacatctttttctcctgagaaatttgagcccagtaaggcttactttgcaac |
32251346 |
T |
|
| Q |
116 |
tgcagagagtgtccgtgattcccttatcataaattggaatgcaacatatgaatattatgagagggttaatgttaagcaagcttattacatgtctatggag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32251347 |
tgcagagagtgtccgtgattcccttatcataaattggaatgcaacatatgaatattatgagagggttaatgttaagcaagcttattacatgtctatggag |
32251446 |
T |
|
| Q |
216 |
tatctacaggttcatattgggtttcctttatgaaacacgggtcattttcattgcaaatgattattaattttcattactacattttttcccaattgtgaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32251447 |
tatctacaggttcatattgggtttcctttatgaaacacgggtcattttcattgcaaatgattattaattttcattactacattttttcccaattgtgaag |
32251546 |
T |
|
| Q |
316 |
ggtagggcattgttaaatgcaattgggaatttacaactctcaggtccttatgctgaggctctgaagaagctgggttacaatttagaggatgtggctaatc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32251547 |
ggtagggcattgttaaatgcaattgggaatttacaactctcaggtccttatgctgaggctctgaagaagctgggttacaatttagaggatgtggctaatc |
32251646 |
T |
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| Q |
416 |
aggttttttcctactattgttctcctttg |
444 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32251647 |
aggttttttcctactattgttctcctttg |
32251675 |
T |
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