View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_1 (Length: 703)
Name: NF9753_low_1
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 654; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 19 - 696
Target Start/End: Original strand, 39959700 - 39960377
Alignment:
| Q |
19 |
gaaagctcatgctatggaagtaagctccgggtgtgatgtgaatgagagtttgttgaactttgcaaggagaaagcaacgtggtctttgtatacttaatggc |
118 |
Q |
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| T |
39959700 |
gaaagctcatgctatggaagtaagctccgggtgtgatgtgaatgagagtttgttgaactttgcaaggagaaagcagcgtggtctttgtatacttaatggc |
39959799 |
T |
|
| Q |
119 |
accggttgtgtcacgaatgtaacgctgcgccaaccagcttcttctggtgccattgtgacccttcatggtcgattcgagattctctcattgttggggtcaa |
218 |
Q |
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| T |
39959800 |
accggttgtgtcacgaatgtaacgctgcgccaaccagcttcttctggtgccattgtgacccttcatggtcgattcgagattctctcattgttgggctcaa |
39959899 |
T |
|
| Q |
219 |
ttcttccgccacctgcaccaccaggaatcactggtcttataatttatttagcgggtgctcaaggacaagttgttggaggtgctgtagttggtgctttgat |
318 |
Q |
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| T |
39959900 |
ttcttccgccacctgcaccaccaggaatcactggtcttacaatttatttagcgggtgctcaaggacaagttgttggaggtgctgtagttggtgctttgat |
39959999 |
T |
|
| Q |
319 |
tgcttcaggacctgttgtgatcatggctgcatcattcatgcatgctactttcgatcgtctgccactggaagacgatgaacttgctgctgcaatgcagaat |
418 |
Q |
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| T |
39960000 |
tgcttcaggacctgttgtgatcatggctgcatcattcatgcatgctactttcgatcgtctgccactggaagacgatgaacttgctgctgcaatgcagaat |
39960099 |
T |
|
| Q |
419 |
cagcattaccaaaatggacgcgcggcacaacatcatctcgatatctctgacttatatgcaatgccgcaaaacctcctcatgaatggtgcaatgccgcctg |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39960100 |
cagcattaccaaaatggacgcgcggcacaacatcatctcgatatctctgacttatatgcaatgccgcaaaacctcctcatgaatggtgcaatgccacctg |
39960199 |
T |
|
| Q |
519 |
agatatactcttgggcaccggggcgaaactagtcaaaaacctgaaacttagtttactattagtagttgtatcacatccacaaaatacactataggatagc |
618 |
Q |
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|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39960200 |
agatatactcttgggcaccgggtcgaaacttgtcaaaaacctgaaacttagtttactattagtagttgtatcacatccacaaaatacactataggatagc |
39960299 |
T |
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| Q |
619 |
tataatgttaccagattcttgtacaagcaagggtataagaaggttgacattgctaaacaagatcatatgcctatgctt |
696 |
Q |
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| T |
39960300 |
tataatgttaccagattcttgtacaagcaagggtataagaaggttgacattgctaaacaagatcatatgcctatgctt |
39960377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 336
Target Start/End: Complemental strand, 3332108 - 3332035
Alignment:
| Q |
263 |
tatttagcgggtgctcaaggacaagttgttggaggtgctgtagttggtgctttgattgcttcaggacctgttgt |
336 |
Q |
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||||||||||| | ||||| || |||||||| || ||| |||||||||||||||||||| ||||||||||| |
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| T |
3332108 |
tatttagcgggcggacaagggcaggttgttggtggaagtgttgttggtgctttgattgcttctggacctgttgt |
3332035 |
T |
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