View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_11 (Length: 440)
Name: NF9753_low_11
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 421
Target Start/End: Complemental strand, 1396514 - 1396095
Alignment:
| Q |
10 |
gcagagagaaatgaagtagag-------tcatcgtataacatgaatacaaacattgactgatatctgctttagtcaatttgggtaagct-taaggtttca |
101 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1396514 |
gcagagagaaatgaagtagagactgttttcatcatataacatgaatacaaacattgactgatatctgctttagtcaatttgggtaagctataaggtttca |
1396415 |
T |
|
| Q |
102 |
aactattgaattgtaagagaatcaagctattcctcagaatgaatgcatatatcagacaatcgtagatcctcgagaattagagatccagctagcagcaaca |
201 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1396414 |
aactattgaattttaagagaatcaagctattcctcagaatgaatgtatatatcagacaatcgtagatcctcgagaattagagatccagctagaagcaaca |
1396315 |
T |
|
| Q |
202 |
tgaaatcttgaattccatttaatttaatgagttgcaacgaaagggttttgagtgatggaaatccaaatccaatagaagaaaaagagaagcctttgacaga |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1396314 |
tgaaatcttgaattccatttaatttaatgagttgcaacgaaagggttttgagtgatggaaatccaaatccaatagaagataaagagaagcctttgacaga |
1396215 |
T |
|
| Q |
302 |
gaggcgacagaggtcgagagtaacaagaaaacacatgtaggattattgatggcaaaaacctaaacactcaacaagaagattaccctaaaataatgtaggg |
401 |
Q |
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| T |
1396214 |
gaggcgacaaaggtcgagagtaacaagaaaacacatgtaggattattgatggcaaaaacctaaacactcaacaagaagattaccctaaaataatgtaggg |
1396115 |
T |
|
| Q |
402 |
ttcacccaccatttgtgtgt |
421 |
Q |
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| T |
1396114 |
ttcacccaccatttgtgtgt |
1396095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 419
Target Start/End: Complemental strand, 1407525 - 1407116
Alignment:
| Q |
10 |
gcagagagaaatgaagtagag-------tcatcgtataacatgaatacaaaca----ttgactgatatctgctttagtcaatttgggtaagcttaaggtt |
98 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1407525 |
gcagagagaaatgaagtagagactgttttcatcatataacatgaatacaaacaaacattgaccgatatctgctttagtcaatttgggtaagcttaaggtt |
1407426 |
T |
|
| Q |
99 |
tcaaactattgaattgtaagagaatcaagctattcctcagaatgaatgcatatatcagacaatcgtagatcctcgagaattagagatccagctagcagca |
198 |
Q |
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|| ||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1407425 |
tcgaactattgaatggtaagagaatcaagctattccttagaatgaatgtatatatcagacaatcgtagatcctcgagaattagagatccagctagaagca |
1407326 |
T |
|
| Q |
199 |
acatgaaatcttgaattccatttaatt------taatgagttgcaacgaaagggttttgagtgatggaaatccaaatccaatagaagaaaaagagaagcc |
292 |
Q |
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| T |
1407325 |
acatgaaatcttgaattccatttaatttaattttaatgagttgcaatgaaagggttttgagtgatggaaatccaaatccaatagaagaaaaagagaagc- |
1407227 |
T |
|
| Q |
293 |
tttgacagagaggcgacagaggtcgagagtaacaagaaaacacatgtaggattattgatggcaaaaacctaaacactcaacaagaagattaccctaaaat |
392 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1407226 |
----------------cagcggtcgagagtaacaagaaaacacatgtaggattattgatggcaaaaacctaaacactcaacaagaagattaccctaaaat |
1407143 |
T |
|
| Q |
393 |
aatgtagggttcacccaccatttgtgt |
419 |
Q |
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||||||||||||||||||||||||||| |
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| T |
1407142 |
aatgtagggttcacccaccatttgtgt |
1407116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 1025559 - 1025640
Alignment:
| Q |
247 |
ttttgagtgatggaaatccaaatccaatagaagaaaaagagaagcctttgacagagaggcgacagaggtcgagagtaacaag |
328 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| || || || ||||||| | ||| ||| |||||| ||||||| |
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| T |
1025559 |
ttttgagtgatggaaatccaaatccaatggaagaaaaagaaaaacccttaacagagaagtgacggagatcgagactaacaag |
1025640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 1722916 - 1722953
Alignment:
| Q |
258 |
ggaaatccaaatccaatagaagaaaaagagaagccttt |
295 |
Q |
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||||||||||||||| ||||||||||||| |||||||| |
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| T |
1722916 |
ggaaatccaaatccagtagaagaaaaagaaaagccttt |
1722953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 35767662 - 35767595
Alignment:
| Q |
236 |
caacgaaagggttttgagtgatggaaatccaaatccaatagaagaaaaagagaagcctttgacagaga |
303 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||| |
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| T |
35767662 |
caaccaaagggttttgagtgatggaaatccaaatccaattgaagaaaaagaaaaacctttgacagaga |
35767595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 8316067 - 8315976
Alignment:
| Q |
236 |
caacgaaagggttttgagtgatggaaatccaaatccaatagaagaaaaagagaagcctttgacagagaggcgacagaggtcgagagtaacaag |
328 |
Q |
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|||| |||||||||||||||||||||||||||||||||| ||| ||||| | ||||| |||||||||| |||| |||||| ||| ||||||| |
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| T |
8316067 |
caaccaaagggttttgagtgatggaaatccaaatccaatggaa-aaaaaaaaaagcccttgacagagaagcgatggaggtcaagactaacaag |
8315976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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