View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_12 (Length: 427)
Name: NF9753_low_12
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 34931826 - 34931416
Alignment:
| Q |
1 |
tcaacaagaaacacccaaaattggtgagtatgtatattgtatataagaactatgttannnnnnnacaatcaatgtgcttcaggaactgtacgaatcagct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
34931826 |
tcaacaagaaacacccaaaattggtgagtatgtatattgtatataagaactatgttatttttttacaatcaatgtgcttcacgaactgtacgaatcagct |
34931727 |
T |
|
| Q |
101 |
gataacatttgattattactatttgtgccatgcctatttgttacataaagcatttctcattaattaacatcgatcacgatagcatcttaattgttgtata |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
34931726 |
gataacatttgattgttactatttgtgccatgcctatttgttacataaagcatttctcattaattaacatcaatcacgatagcatcttaattgttgtaca |
34931627 |
T |
|
| Q |
201 |
aacattgtaggagaaacttgagtatggccaagatgttatggtgcaagctgaaaagacaaatggaattggtaaagcagaaaaacaagcattattaaacatg |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34931626 |
aacattgtaggagaaacttgggtatggccaagatgtcatggtgcaagctgaaaagacaaatggaattggtaaagcagaaaaacaagcattattaaacatg |
34931527 |
T |
|
| Q |
301 |
acaagatggtcacaaaatgggtttgagaaactgatgaaaagaaataaacttgatgctgtagtaacacctatttggtcctttagccatatacttggtattg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34931526 |
acaagatggtcacaaaatgggtttgagaaactgatgaaaagaaataaacttgatgctgtagtaacacctatttggtcctttagccatatacttgctattg |
34931427 |
T |
|
| Q |
401 |
gaggttatcct |
411 |
Q |
| |
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||||||||||| |
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| T |
34931426 |
gaggttatcct |
34931416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 34926912 - 34926509
Alignment:
| Q |
1 |
tcaacaagaaacacccaaaattggtgagtatgtatattgtatataagaactatgttannnnnnnacaatcaatgtgcttcaggaactgtacgaatcagct |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| | |||| |||||||||||| || | || | ||||||| || ||||| |||||| || |
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| T |
34926912 |
tcaacaagaaacacccaaaatcggtgagtatgtatatagaatattagaactatgttatttttt-acgaccagtttgcttcacga-ctgtaagaatcaact |
34926815 |
T |
|
| Q |
101 |
gataacatttgattattactatttgtgccatgcctatttgttacataaagcatttctcattaattaacatcgatcacgatagcatcttaattgttgtata |
200 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| ||||||||||||||||||||||||||||| |
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| T |
34926814 |
gataacatttgattgttactatttgtgccatgcctatttgttacataaag----tc-cagctatgaacattgatcacgatagcatcttaattgttgtata |
34926720 |
T |
|
| Q |
201 |
aacattgtaggagaaacttgagtatggccaagatgttatggtgcaagctgaaaagacaaatggaattggtaaagcagaaaaacaagcattattaaacatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||| |
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| T |
34926719 |
aacattgtaggagaaacttgagtatggccaagatctcatggtgcaagctgaaaagacaaacggaattgggaaagcagagaaacaagcattattaaatatg |
34926620 |
T |
|
| Q |
301 |
acaagatggtcacaaaatgggtttgagaaactgatgaaaagaaataaacttgatgctgtagtaacacctatttggtcctttagccatatacttggtattg |
400 |
Q |
| |
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||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| | |||||||| | ||||||| |||| |
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| T |
34926619 |
acaagatcgtcacagaatgggtttgaaaaactgatgaaaagaaataaacttgatgctgtggtaatacctttggcatcctttagtaacatacttgccattg |
34926520 |
T |
|
| Q |
401 |
gaggttatcct |
411 |
Q |
| |
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||||||||||| |
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| T |
34926519 |
gaggttatcct |
34926509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 173 - 411
Target Start/End: Complemental strand, 34896559 - 34896321
Alignment:
| Q |
173 |
atcacgatagcatcttaattgttgtataaacattgtaggagaaacttgagtatggccaagatgttatggtgcaagctgaaaagacaaatggaattggtaa |
272 |
Q |
| |
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|||||||||| |||||||||||| |||||| |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34896559 |
atcacgataggatcttaattgttatataaaagttgtaggagaaaatggagtatggccaagatgtcatggtgcaagctgaaaagacaaatggaattggtaa |
34896460 |
T |
|
| Q |
273 |
agcagaaaaacaagcattattaaacatgacaagatggtcacaaaatgggtttgagaaactgatgaaaagaaataaacttgatgctgtagtaacacctatt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
34896459 |
agcagaaaaacaagcattattaaacatgacaagatggtcagaaaatgggtttgagaaactgatgaaaataaataaacttgatgctgtagtaacacctttt |
34896360 |
T |
|
| Q |
373 |
tggtcctttagccatatacttggtattggaggttatcct |
411 |
Q |
| |
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||||||||||| || ||||||| |||||||||||||||| |
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| T |
34896359 |
tggtcctttagtcacatacttgctattggaggttatcct |
34896321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 160 - 411
Target Start/End: Complemental strand, 34910061 - 34909811
Alignment:
| Q |
160 |
ttaattaacatcgatcacgatagcatcttaattgttgtataaacattgtaggagaaacttgagtatggccaagatgttatggtgcaagctgaaaagacaa |
259 |
Q |
| |
|
|||||||| || |||||| |||| |||| |||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |
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| T |
34910061 |
ttaattaatattgatcactatagaatctgaattgttgtataaa-attgtaggagaaaatggagtatggccaagatgtattggtgcaagctgaaaagacaa |
34909963 |
T |
|
| Q |
260 |
atggaattggtaaagcagaaaaacaagcattattaaacatgacaagatggtcacaaaatgggtttgagaaactgatgaaaagaaataaacttgatgctgt |
359 |
Q |
| |
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| || |||| |||||||||||| |||||||||| || ||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34909962 |
acggttttgggaaagcagaaaaagaagcattattgaatatgtcaagatggtcagaaaatgggtttgagaaactgatgaaaataaataaacttgatgctgt |
34909863 |
T |
|
| Q |
360 |
agtaacacctatttggtcctttagccatatacttggtattggaggttatcct |
411 |
Q |
| |
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| | |||||| |||||||||||||||| ||||| | |||||||||||||||| |
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| T |
34909862 |
aatgacacctttttggtcctttagccacatactggctattggaggttatcct |
34909811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 188 - 411
Target Start/End: Complemental strand, 34919992 - 34919766
Alignment:
| Q |
188 |
taattgttgtataaacattgtaggagaaacttga---gtatggccaagatgttatggtgcaagctgaaaagacaaatggaattggtaaagcagaaaaaca |
284 |
Q |
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||||||||||||||| |||||||||| ||||||| ||||||||||||| | ||| |||||||||||||||||||||||||||| | | | ||| | |
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| T |
34919992 |
taattgttgtataaaaattgtaggaggaacttgataagtatggccaagatatcatgttgcaagctgaaaagacaaatggaattggaagtatacagaaaga |
34919893 |
T |
|
| Q |
285 |
agcattattaaacatgacaagatggtcacaaaatgggtttgagaaactgatgaaaagaaataaacttgatgctgtagtaacacctatttggtcctttagc |
384 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||| ||||| ||| ||| |||||||| |
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| T |
34919892 |
agcattattaaacatgacaagatggtcagaaaatgggtttgagaaactgataaaaacaaatgaacttgatgctgtggtaacgcctttttcatcctttagt |
34919793 |
T |
|
| Q |
385 |
catatacttggtattggaggttatcct |
411 |
Q |
| |
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||||||| |||||||||||||||| |
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| T |
34919792 |
agcatacttgctattggaggttatcct |
34919766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 409
Target Start/End: Complemental strand, 34914153 - 34914075
Alignment:
| Q |
331 |
ctgatgaaaagaaataaacttgatgctgtagtaacacctatttggtcctttagccatatacttggtattggaggttatc |
409 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||| ||| | |||||| ||||||| |||||||||||||| |
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|
| T |
34914153 |
ctgatgaaaataaataaacttgatcctgtggtaacacctttttcattctttagtagcatacttgctattggaggttatc |
34914075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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