View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9753_low_15 (Length: 382)
Name: NF9753_low_15
Description: NF9753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9753_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 34428183 - 34428546
Alignment:
| Q |
1 |
cataaacatctatcaaaaccaatgaaagacatgcatatcaacttcaatagtcacggcaacatcaagataagcataaaatctttaaaaatgaatgaagtgt |
100 |
Q |
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| T |
34428183 |
cataaacatctatcaaaaccaatgaaagacatgcatatcaacttcaatagtcacgacaacatcaagataagcataaaatctttaaaaatgaatgaagtgt |
34428282 |
T |
|
| Q |
101 |
taaattttgaaatagaactaatcgaccgacattcaatttaaaggactaaactactattttgcaaatttcaagaactaattgatcaatgcttacaatttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34428283 |
taaattttgaaatagaactaatcgaccgacattcaatttaaaggactaaactactattttgcaaatttcaagaactaattgatcaatgcttacaatttgg |
34428382 |
T |
|
| Q |
201 |
aggactaaaatacttacttactcaaagttatatcattcaattaaaggtcattcnnnnnnntatatcattgcattgatgcaactatgtcagaaccaaaaga |
300 |
Q |
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| T |
34428383 |
aggactaaaatacttatttactc-aagttatatcattcaattaaaggtcattcaaaaaaatatatcattgcattgatgcaactatgtcagaaccaaaaga |
34428481 |
T |
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| Q |
301 |
aggccaataactagctatgagttacacatggggattgcagattgaggcattaaactgaaatgact |
365 |
Q |
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| T |
34428482 |
aggccaacaactagctatgagttacacatggggattgcagattgaggcattaaactgaaatgact |
34428546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34414939 - 34415029
Alignment:
| Q |
1 |
cataaacatctatcaaaaccaatgaaagacatgcatatcaacttcaatagtcac-ggcaacatcaagataagcataaaatctttaaaaatg |
90 |
Q |
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|||||||||||| ||||| ||||||||||||| |||||| ||||||||| || | |||||||||| |||||| |||||||||| |||||| |
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| T |
34414939 |
cataaacatctaacaaaatcaatgaaagacatacatatcgacttcaataatctcttgcaacatcaatataagcgtaaaatctttgaaaatg |
34415029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 34898136 - 34898088
Alignment:
| Q |
3 |
taaacatctatcaaaaccaatgaaagacatgcatatcaacttcaatagt |
51 |
Q |
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|||||||| |||||||||||| |||||||||||||| ||||| ||||| |
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| T |
34898136 |
taaacatccatcaaaaccaataaaagacatgcatattgacttcgatagt |
34898088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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